Rh4CG269600

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011376
Physical Location & Seq
Reverse (-)
52386703 .. 52388794
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG269600.1

Sequence Viewer

Length: 264 bp
ATGGCATATCTAACTGCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTACTTTGATTCAGCGGATTGGGCACTATGCAAGCAAGGTGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGAGAACGCCACACCAGCAGCTTCCTCCAAGGAGACCTGCTTGTACTACATCTGGTCATGATAGCCATGGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

87

Amino Acids

9.33

Weight (kDa)

9.47

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 10 - 77 7.9e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 87
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 75
AluBI AGCT 2 cut(s) 26, 208
AluI AGCT 2 cut(s) 26, 208
Alw26I GTCTC 2 cut(s) 161, 214
AlwI GGATC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 26, 158, 205
AsuHPI GGTGA 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 13, 170, 217
BcoDI GTCTC 2 cut(s) 161, 214
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 3 cut(s) 27, 159, 206
BlsI GCNGC 3 cut(s) 28, 160, 207
BsaI GGTCTC 2 cut(s) 161, 214
BsaJI CCNNGG 2 cut(s) 215, 253
BseDI CCNNGG 2 cut(s) 215, 253
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 13, 170, 217
BseYI CCCAGC 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 161, 214
Bso31I GGTCTC 2 cut(s) 161, 214
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 107
BspHI TCATGA 2 cut(s) 82, 244
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 87
BspTNI GGTCTC 2 cut(s) 161, 214
BssECI CCNNGG 2 cut(s) 215, 253
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 2 cut(s) 215, 253
BstC8I GCNNGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 253
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 161, 214
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 23, 113, 202
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 13, 170, 217
BtgI CCRYGG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 2 cut(s) 82, 244
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 83, 245, 254
CviJI RGCY 4 cut(s) 26, 64, 208, 252
CviKI_1 RGCY 4 cut(s) 26, 64, 208, 252
CviQI GTAC 1 cut(s) 231
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 215, 253
Eco31I GGTCTC 2 cut(s) 161, 214
EcoT14I CCWWGG 2 cut(s) 215, 253
ErhI CCWWGG 2 cut(s) 215, 253
FaeI CATG 3 cut(s) 86, 248, 257
FaiI YATR 7 cut(s) 7, 39, 84, 121, 246, 255, 262
FatI CATG 3 cut(s) 82, 244, 253
Fnu4HI GCNGC 3 cut(s) 27, 159, 206
Fsp4HI GCNGC 3 cut(s) 27, 159, 206
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 27, 159, 206
GsaI CCCAGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 86, 248, 257
HinfI GANTC 2 cut(s) 101, 142
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 83, 245
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 17, 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 113, 202
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 86, 248, 257
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 120, 215, 225, 237
Lsp1109I GCAGC 3 cut(s) 13, 170, 217
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 88
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 2 cut(s) 35, 222
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 26, 107
MwoI GCNNNNNNNGC 3 cut(s) 23, 113, 202
NcoI CCATGG 1 cut(s) 253
NdeII GATC 1 cut(s) 79
NlaIII CATG 3 cut(s) 86, 248, 257
PagI TCATGA 2 cut(s) 82, 244
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 28, 160, 207
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 87
SatI GCNGC 3 cut(s) 27, 159, 206
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 28, 91, 133, 173, 210, 226
SfcI CTRYAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 87
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 215, 253
TaiI ACGT 1 cut(s) 91
TatI WGTACW 1 cut(s) 230
TfiI GAWTC 1 cut(s) 101
TscAI CASTG 1 cut(s) 168
TseI GCWGC 3 cut(s) 26, 158, 205
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 1 cut(s) 168
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.