Rorug04G0197000

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011376
Physical Location & Seq
Forward (+)
34300168 .. 34301247
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0197000.1

Sequence Viewer

Length: 1080 bp
ATGCCGGAAAGAAAAGGTAAATACTCGGTTAAGTCTGCATATTGGCTTGCTCGACAGCAGGTAATGGAAAACTTCCTAGCCTCTACTTCATCAGGAGACCCTTACCAGTTTCTGTGGAAGAAAATATGGAATGCAAGGGTGCCGGGAAGGGTGAAAATCTATGTATGGAGAGCTGTGAAAAATATCCTGCCTACAAGAGAGCAGTTGAGTCATAAGGGCTACACTGGTCCGGGGAATTGTTTGTTATGTCAGGAAATGTGTGAGACAAACACTCATGTCTTTCGCCATTGCCCTGATGCTAAAGAAGCTCTTAGAATAGCAGCTATCCCACTTCAAAGCAGCATGCCTTGCCATTTCAAAGATTGGATGTTAACTCAAGGGAAGCTTCTTGACAACGCAAATTGGGAGAGGTTAATTATGCTTATTTGGGCTCTTTGGAAGAACAGGAACAAGAAGTTGTGGAATGATACCACTCAAACAGCACAGGCCATTGTAGTTGGTTCATTGACTTTGTATCAGGAATTTTTACAAGTGCAACAAATGCAAATGCAAAGTCAAGCAGCAAAGTCTAGTAAATATTGGACTCCACCGCCAACTCAAAAGCTTAAAATCAATGTTGATGGCGCTTTCCTACCCTCTAAGCATATTGGGGGTATAGGTGGAGTTATCAGAAGAGAGGATGGCTCTTTTGTTGCTAGCTTTTCTCAGTCCTTTCAATATGTGTCGTCTCCAAAGCAGGCGGAGCTGTTAGCCATTAGAGCTGGAATTGACTTACTGCTGCAACTCAGATTGGAGAATGTCTATGTGGAAAGCGACTGCCAGCTTGCCATCCAAGAGGTTGGTGCAAATGATTTTGAGTTAAATGAAAATGCCAACCTCCTTGCTGATATACATCATGGTAGTAAACTTGTAAAAGATCTGTCTTTCCTGTTTGCTCCCCGAACTGCCAATATAGTGGCACATAGATTAGCTGCTTTTGGTTATGAATTCAATACCAATCAGGTATGGATTGATCGAGCTCCAGCAATTATTCTGGATGCTTTAGAGTTTGATTGTAATCATTTACCCCAAATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

359

Amino Acids

40.88

Weight (kDa)

8.96

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 8 - 102 3.8e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 205 - 326 4.9e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 139
AciI CCGC 2 cut(s) 590, 740
AcsI RAATTY 3 cut(s) 521, 986, 1071
AgsI TTSAA 5 cut(s) 335, 358, 716, 991, 1076
Alw21I GWGCWC 1 cut(s) 1021
Alw26I GTCTC 3 cut(s) 90, 257, 732
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 5 cut(s) 320, 339, 560, 778, 971
ApoI RAATTY 3 cut(s) 521, 986, 1071
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 2 cut(s) 144, 231
AsuHPI GGTGA 1 cut(s) 163
AsuNHI GCTAGC 1 cut(s) 695
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 433, 1021
Bbv12I GWGCWC 1 cut(s) 1021
BbvI GCAGC 5 cut(s) 332, 351, 572, 765, 958
BccI CCATC 3 cut(s) 614, 674, 836
BcnI CCSGG 2 cut(s) 144, 231
BcoDI GTCTC 3 cut(s) 90, 257, 732
BfaI CTAG 3 cut(s) 77, 570, 696
BfoI RGCGCY 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 916
BisI GCNGC 5 cut(s) 321, 340, 561, 779, 972
BlsI GCNGC 5 cut(s) 322, 341, 562, 780, 973
Bme1390I CCNGG 2 cut(s) 144, 231
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 144, 231
BmsI GCATC 2 cut(s) 286, 1027
BmtI GCTAGC 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 144, 231
BsaBI GATNNNNATC 2 cut(s) 891, 1056
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 106, 229
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 891, 1056
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 4 cut(s) 372, 685, 828, 1042
BseJI GATNNNNATC 2 cut(s) 891, 1056
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 719, 799
BseNI ACTGG 2 cut(s) 106, 229
BseXI GCAGC 5 cut(s) 332, 351, 572, 765, 958
BshFI GGCC 1 cut(s) 488
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 1021
BsiSI CCGG 3 cut(s) 5, 143, 230
BsmAI GTCTC 3 cut(s) 90, 257, 732
BsmBI CGTCTC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 488
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 433, 1021
Bsp143I GATC 2 cut(s) 916, 1012
BspACI CCGC 2 cut(s) 590, 740
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 718, 798
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 49
BspOI GCTAGC 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 2 cut(s) 106, 229
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 916, 1012
Bst6I CTCTTC 1 cut(s) 667
BstAPI GCANNNNNTGC 2 cut(s) 348, 541
BstC8I GCNNGC 6 cut(s) 48, 344, 697, 738, 821, 825
BstDEI CTNAG 4 cut(s) 311, 639, 705, 785
BstF5I GGATG 4 cut(s) 372, 685, 828, 1042
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 2 cut(s) 919, 1015
BstMAI GTCTC 3 cut(s) 90, 257, 732
BstMBI GATC 2 cut(s) 916, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 305, 348, 541, 742, 758
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 142, 229
BstV1I GCAGC 5 cut(s) 332, 351, 572, 765, 958
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 2 cut(s) 839, 955
BstYI RGATCY 1 cut(s) 916
BsuRI GGCC 1 cut(s) 488
BtsCI GGATG 4 cut(s) 372, 685, 828, 1042
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 6 cut(s) 48, 344, 697, 738, 821, 825
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 3 cut(s) 275, 343, 896
DdeI CTNAG 4 cut(s) 311, 639, 705, 785
DpnI GATC 2 cut(s) 918, 1014
DpnII GATC 2 cut(s) 916, 1012
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
EciI GGCGGA 1 cut(s) 755
Ecl136II GAGCTC 1 cut(s) 1019
Eco24I GRGCYC 2 cut(s) 433, 1021
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 1019
EcoICRI GAGCTC 1 cut(s) 1019
EcoRI GAATTC 1 cut(s) 986
EcoT38I GRGCYC 2 cut(s) 433, 1021
Esp3I CGTCTC 1 cut(s) 732
FaeI CATG 3 cut(s) 278, 346, 899
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 369, 401
FatI CATG 3 cut(s) 274, 342, 895
Fnu4HI GCNGC 5 cut(s) 321, 340, 561, 779, 972
FokI GGATG 4 cut(s) 379, 692, 815, 1049
FriOI GRGCYC 2 cut(s) 433, 1021
Fsp4HI GCNGC 5 cut(s) 321, 340, 561, 779, 972
FspBI CTAG 3 cut(s) 77, 570, 696
GlaI GCGC 1 cut(s) 625
GluI GCNGC 5 cut(s) 321, 340, 561, 779, 972
GsuI CTGGAG 1 cut(s) 1005
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 1 cut(s) 488
HapII CCGG 3 cut(s) 5, 143, 230
HhaI GCGC 1 cut(s) 626
Hin1II CATG 3 cut(s) 278, 346, 899
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 2 cut(s) 383, 602
HinfI GANTC 2 cut(s) 208, 583
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 3 cut(s) 5, 143, 230
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 372, 905
Hpy188I TCNGA 2 cut(s) 671, 788
Hpy188III TCNNGA 5 cut(s) 93, 251, 389, 518, 1034
Hpy8I GTNNAC 2 cut(s) 372, 905
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 7 cut(s) 38, 134, 535, 544, 550, 781, 845
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 348, 541, 742, 758
HpyF3I CTNAG 4 cut(s) 311, 639, 705, 785
Hsp92II CATG 3 cut(s) 278, 346, 899
HspAI GCGC 1 cut(s) 624
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 2 cut(s) 916, 1012
LmnI GCTCC 3 cut(s) 742, 940, 1024
Lsp1109I GCAGC 5 cut(s) 332, 351, 572, 765, 958
LweI GCATC 2 cut(s) 286, 1027
MaeI CTAG 3 cut(s) 77, 570, 696
MalI GATC 2 cut(s) 918, 1014
MboI GATC 2 cut(s) 916, 1012
MboII GAAGA 3 cut(s) 130, 451, 684
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 433, 1021
MluCI AATT 8 cut(s) 235, 400, 414, 521, 765, 986, 1026, 1071
MlyI GAGTC 2 cut(s) 217, 577
MnlI CCTC 6 cut(s) 91, 402, 646, 670, 829, 887
MseI TTAA 5 cut(s) 30, 371, 413, 606, 860
MspI CCGG 3 cut(s) 5, 143, 230
MspR9I CCNGG 2 cut(s) 144, 231
Mva1269I GAATGC 1 cut(s) 136
MwoI GCNNNNNNNGC 5 cut(s) 305, 348, 541, 742, 758
NciI CCSGG 2 cut(s) 144, 231
NdeII GATC 2 cut(s) 916, 1012
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 3 cut(s) 278, 346, 899
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PctI GAATGC 1 cut(s) 136
PkrI GCNGC 5 cut(s) 322, 341, 562, 780, 973
PleI GAGTC 2 cut(s) 216, 577
PpsI GAGTC 2 cut(s) 216, 577
Psp124BI GAGCTC 1 cut(s) 1021
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 916
SacI GAGCTC 1 cut(s) 1021
SaqAI TTAA 5 cut(s) 30, 371, 413, 606, 860
SatI GCNGC 5 cut(s) 321, 340, 561, 779, 972
Sau3AI GATC 2 cut(s) 916, 1012
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 217, 577
ScrFI CCNGG 2 cut(s) 144, 231
SduI GDGCHC 2 cut(s) 433, 1021
SfaNI GCATC 2 cut(s) 286, 1027
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SphI GCATGC 1 cut(s) 346
Sse9I AATT 8 cut(s) 235, 400, 414, 521, 765, 986, 1026, 1071
SsiI CCGC 2 cut(s) 590, 740
SspI AATATT 1 cut(s) 578
SspMI CTAG 3 cut(s) 77, 570, 696
SstI GAGCTC 1 cut(s) 1021
StyD4I CCNGG 2 cut(s) 142, 229
TaqI TCGA 2 cut(s) 52, 1015
TasI AATT 8 cut(s) 235, 400, 414, 521, 765, 986, 1026, 1071
Tru1I TTAA 5 cut(s) 30, 371, 413, 606, 860
Tru9I TTAA 5 cut(s) 30, 371, 413, 606, 860
TscAI CASTG 1 cut(s) 229
TseI GCWGC 5 cut(s) 320, 339, 560, 778, 971
TspDTI ATGAA 4 cut(s) 78, 492, 879, 999
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 3 cut(s) 521, 986, 1071
XceI RCATGY 1 cut(s) 346
XspI CTAG 3 cut(s) 77, 570, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.