AT4G17440

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007755
Physical Location & Seq
Forward (+)
9727687 .. 9729366
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17440.2

Sequence Viewer

Length: 648 bp
ATGTCTGCGAATTCCAAGTCGGAGAGGTCTGCTTCTCAATCGGCGGAGACGGTGGCTGTTTCTAACCGTGTCGTGGCGTCACGGTCAAGTCGTCAGCCGCGTCTCTCTTTCTCCTCCTTTGCTCCCTCATCAGAGCACGATAACCTGAAGAAGCTGAAATCCGATGAGATTTCTCCCGCGAGAGAGGAAGTGCCGGTGTCGGTGAAGGAGAGAGAAGAAACGGAGGAGGAGGAAGCGAAGAGGACGTGGAATCTTCGTCCGAGGAAGGCTTATGGTGGTTCGAAGAAAGGAAACGGCGTGTTCACGGCGGAGGTTTGCGGTGGCGGCGGAGGAGGAGGTTCGGAGGTGAAGAATCAGAAATCAGGCGCAGGAATTGAGCCGAAATCGAACAGGCAGAGAGGAATCCCGGCGGAATCACCCGGATTAGGCGGTGGTGAGGTTGCAAACGAGAATCATAGGCTTTGGGTTGCTCTAGCTCGAGACGAGATCGAAGAAGATTTGTTCAGCATGAGTGGGAACAGGTCATCTCGCCGGCCAAGGAAGAGGGCAAAAGCTATGCAGAAACATCTCGATGTCATTTTCCCTGGATTGGGTCTCGTTGGGATGAATGCTGATTGCTTCAGAGTAGCCACTTCTCCGGCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

215

Amino Acids

23.17

Weight (kDa)

9.65

Isoelectric Point (pI)

72.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 158 - 207 1.7e-18 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 100, 179
AciI CCGC 9 cut(s) 44, 98, 177, 308, 318, 324, 327, 410, 429
AcoI YGGCCR 1 cut(s) 533
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 2 cut(s) 167, 604
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 4 cut(s) 73, 425, 589, 590
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 3 cut(s) 154, 476, 554
AluI AGCT 3 cut(s) 154, 476, 554
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 4 cut(s) 41, 107, 474, 599
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 1 cut(s) 533
ApoI RAATTY 1 cut(s) 10
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 407, 420
AsuHPI GGTGA 4 cut(s) 214, 358, 408, 446
AsuII TTCGAA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 138
BceAI ACGGC 2 cut(s) 310, 321
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 2 cut(s) 407, 420
BcoDI GTCTC 4 cut(s) 41, 107, 474, 599
BfaI CTAG 1 cut(s) 473
BisI GCNGC 2 cut(s) 98, 325
BlsI GCNGC 2 cut(s) 99, 326
Bme1390I CCNGG 3 cut(s) 407, 420, 585
BmeT110I CYCGRG 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 407, 420, 585
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 2 cut(s) 407, 420
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 260, 536, 583
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 425, 589, 590
Bse118I RCCGGY 2 cut(s) 193, 531
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 260, 536, 583
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 73, 425, 589, 590
BseRI GAGGAG 5 cut(s) 103, 239, 242, 345, 348
Bsh1236I CGCG 2 cut(s) 100, 179
BshFI GGCC 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 5 cut(s) 194, 407, 420, 532, 638
BslI CCNNNNNNNGG 4 cut(s) 73, 425, 589, 590
BsmAI GTCTC 4 cut(s) 41, 107, 474, 599
BsmBI CGTCTC 3 cut(s) 41, 107, 474
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 535
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 486
BspACI CCGC 9 cut(s) 44, 98, 177, 308, 318, 324, 327, 410, 429
BspANI GGCC 1 cut(s) 535
BspFNI CGCG 2 cut(s) 100, 179
BspT104I TTCGAA 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 599
BsrFI RCCGGY 2 cut(s) 193, 531
BssAI RCCGGY 2 cut(s) 193, 531
BssECI CCNNGG 3 cut(s) 260, 536, 583
BssMI GATC 1 cut(s) 486
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 52, 68, 84
Bst6I CTCTTC 2 cut(s) 233, 536
BstACI GRCGYC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 642
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 2 cut(s) 100, 179
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 489
BstMAI GTCTC 4 cut(s) 41, 107, 474, 599
BstMBI GATC 1 cut(s) 486
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 3 cut(s) 405, 418, 583
BstUI CGCG 2 cut(s) 100, 179
BsuRI GGCC 1 cut(s) 535
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 533
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 2 cut(s) 193, 531
CseI GACGC 2 cut(s) 66, 89
CviAII CATG 1 cut(s) 508
DdeI CTNAG 1 cut(s) 642
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 233, 536
EarI CTCTTC 2 cut(s) 233, 536
EciI GGCGGA 4 cut(s) 59, 323, 342, 425
Eco130I CCWWGG 1 cut(s) 536
Eco31I GGTCTC 1 cut(s) 599
Eco57I CTGAAG 2 cut(s) 167, 604
Eco88I CYCGRG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 536
Esp3I CGTCTC 3 cut(s) 41, 107, 474
FaeI CATG 1 cut(s) 511
FaiI YATR 4 cut(s) 273, 456, 509, 557
FatI CATG 1 cut(s) 507
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 98, 325
FokI GGATG 1 cut(s) 616
Fsp4HI GCNGC 2 cut(s) 98, 325
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 367
GluI GCNGC 2 cut(s) 98, 325
HaeIII GGCC 1 cut(s) 535
HapII CCGG 5 cut(s) 194, 407, 420, 532, 638
HgaI GACGC 2 cut(s) 66, 89
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 5 cut(s) 250, 352, 402, 413, 451
HpaII CCGG 5 cut(s) 194, 407, 420, 532, 638
HphI GGTGA 4 cut(s) 214, 358, 408, 446
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 7 cut(s) 22, 133, 163, 261, 343, 357, 623
Hpy188III TCNNGA 2 cut(s) 479, 569
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 199, 259
HpyCH4III ACNGT 3 cut(s) 52, 68, 84
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 443, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 366
KroI GCCGGC 1 cut(s) 531
KroNI GCCGGC 1 cut(s) 533
Kzo9I GATC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 127
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 488
MboI GATC 1 cut(s) 486
MboII GAAGA 9 cut(s) 160, 227, 245, 250, 295, 361, 503, 506, 553
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 2 cut(s) 10, 372
MroNI GCCGGC 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 5 cut(s) 194, 407, 420, 532, 638
MspR9I CCNGG 3 cut(s) 407, 420, 585
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 2 cut(s) 100, 179
MwoI GCNNNNNNNGC 1 cut(s) 324
NaeI GCCGGC 1 cut(s) 533
NciI CCSGG 2 cut(s) 407, 420
NdeII GATC 1 cut(s) 486
NgoMIV GCCGGC 1 cut(s) 531
NlaIII CATG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 78
NspV TTCGAA 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 477
PcsI WCGNNNNNNNCGW 2 cut(s) 88, 97
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 533
PfeI GAWTC 5 cut(s) 250, 352, 402, 413, 451
PkrI GCNGC 2 cut(s) 99, 326
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 570
SatI GCNGC 2 cut(s) 98, 325
Sau3AI GATC 1 cut(s) 486
ScrFI CCNGG 3 cut(s) 407, 420, 585
SduI GDGCHC 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 2 cut(s) 10, 372
SsiI CCGC 9 cut(s) 44, 98, 177, 308, 318, 324, 327, 410, 429
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 3 cut(s) 405, 418, 583
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 3 cut(s) 52, 68, 84
TaiI ACGT 1 cut(s) 248
TaqI TCGA 5 cut(s) 281, 386, 478, 489, 570
TasI AATT 2 cut(s) 10, 372
TauI GCSGC 2 cut(s) 100, 327
TfiI GAWTC 5 cut(s) 250, 352, 402, 413, 451
TseFI GTSAC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 236
XapI RAATTY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 477
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.