pycom04g05490

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007755
Physical Location & Seq
Forward (+)
5276819 .. 5277751
933 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05490.1

Sequence Viewer

Length: 705 bp
ATGGCGACAGCGCCAGTGAAGCCGCCGCTGCACAACTTCCCGCTCACATTCTTGAAATGGGGGACTAAGAACGCCACCGCCAACAACCACAACCGCTACCGCCGACCCGCCTCCGCTGAACCGGCCTCCGAGCCCGACTCCGAATCCGACCGCCACAACCGGGTCGGGTCCTCCAGGGCCGATCGCCGCCGATTATCGCTGATCTCGTGCTCGGAAAACAAGCGCCGTAGGAGCGAGGAGAGGGAGAGCGATCAAGAGGAGGAAGCTGAGGTGCTACTTCAGAAGCCCTGGAATTTGAGGCCCAGGAGACCTCCCGCGACGGCGTCGTTTCAAAAGGCAAGTGGCCCTAACGCCGCGGTTGGTGCGAACCGGGAAGGGCAGGAACCTGAAGGGCCGAACAGAAGTCAGAGCGAGATGATGCAGCAGCAGCAGCAGCCGAAGTCGATGAGGTTGAGGGGTTTGGCGGAGGGGCAAAGTGTGGAGAAGAAGAAGAAGGAGAAGAGCAAGTTCTGGATCGCTTTGTCGAAGGAGGAGATTGAAGAGGACGTGTTCGTGATGACCGGGTCGAGGCCCTCCAGAAGGCCCAAGAAGCGACCCAAGAATGTTCAGAAGCAGCTCGATAGTATCTTTCCTGGGTTGTGGCTGGTTGGTGTTACTGCTGATGCTTATAAGTCTGCTGATTCTCCATGTAGATTTGTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

235

Amino Acids

26.63

Weight (kDa)

10.03

Isoelectric Point (pI)

87.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 174 - 223 2.1e-28 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 2 cut(s) 317, 356
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 2 cut(s) 263, 408
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 3 cut(s) 160, 567, 579
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 55, 332, 539
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 4 cut(s) 173, 287, 302, 631
AluBI AGCT 2 cut(s) 266, 616
AluI AGCT 2 cut(s) 266, 616
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 521
AoxI GGCC 7 cut(s) 123, 177, 299, 343, 392, 569, 581
ApeKI GCWGC 7 cut(s) 28, 421, 424, 427, 430, 433, 613
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 2 cut(s) 13, 225
AspS9I GGNCC 7 cut(s) 168, 177, 300, 344, 392, 570, 582
AsuC2I CCSGG 3 cut(s) 161, 371, 562
AvaII GGWCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 7 cut(s) 15, 433, 436, 439, 442, 445, 625
BceAI ACGGC 2 cut(s) 210, 336
BciT130I CCWGG 4 cut(s) 175, 289, 304, 633
BcnI CCSGG 3 cut(s) 161, 371, 562
BcoDI GTCTC 1 cut(s) 301
BfoI RGCGCY 2 cut(s) 14, 226
Bme1390I CCNGG 7 cut(s) 161, 175, 289, 304, 371, 562, 633
Bme18I GGWCC 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 7 cut(s) 168, 177, 300, 344, 392, 570, 582
BmiI GGNNCC 2 cut(s) 169, 384
BmrFI CCNGG 7 cut(s) 161, 175, 289, 304, 371, 562, 633
BmsI GCATC 2 cut(s) 408, 652
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 157, 559
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 3 cut(s) 161, 371, 562
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 5 cut(s) 174, 287, 302, 354, 632
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 567, 579
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 4 cut(s) 175, 289, 304, 633
BseDI CCNNGG 5 cut(s) 174, 287, 302, 354, 632
BseLI CCNNNNNNNGG 3 cut(s) 160, 567, 579
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 3 cut(s) 251, 272, 545
BseXI GCAGC 7 cut(s) 15, 433, 436, 439, 442, 445, 625
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 317, 356
Bsh1285I CGRYCG 2 cut(s) 151, 184
BshFI GGCC 7 cut(s) 125, 179, 301, 345, 394, 571, 583
BsiEI CGRYCG 2 cut(s) 151, 184
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 4 cut(s) 122, 160, 370, 561
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 3 cut(s) 160, 567, 579
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 7 cut(s) 125, 179, 301, 345, 394, 571, 583
Bso31I GGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 135, 212
Bsp143I GATC 4 cut(s) 181, 201, 250, 513
BspANI GGCC 7 cut(s) 125, 179, 301, 345, 394, 571, 583
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 2 cut(s) 317, 356
BspLI GGNNCC 2 cut(s) 169, 384
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 174, 287, 302, 354, 632
BssMI GATC 4 cut(s) 181, 201, 250, 513
BssNI GRCGYC 1 cut(s) 323
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 4 cut(s) 175, 289, 304, 633
Bst6I CTCTTC 2 cut(s) 494, 534
BstACI GRCGYC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 66, 267
BstDSI CCRYGG 1 cut(s) 354
BstENI CCTNNNNNAGG 1 cut(s) 577
BstFNI CGCG 2 cut(s) 317, 356
BstH2I RGCGCY 2 cut(s) 14, 226
BstHHI GCGC 2 cut(s) 13, 225
BstKTI GATC 4 cut(s) 184, 204, 253, 516
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 4 cut(s) 181, 201, 250, 513
BstMCI CGRYCG 2 cut(s) 151, 184
BstMWI GCNNNNNNNGC 9 cut(s) 19, 28, 122, 231, 362, 427, 430, 433, 589
BstNI CCWGG 4 cut(s) 175, 289, 304, 633
BstSCI CCNGG 7 cut(s) 159, 173, 287, 302, 369, 560, 631
BstUI CGCG 2 cut(s) 317, 356
BstV1I GCAGC 7 cut(s) 15, 433, 436, 439, 442, 445, 625
BsuRI GGCC 7 cut(s) 125, 179, 301, 345, 394, 571, 583
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 21
CfoI GCGC 2 cut(s) 13, 225
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 7 cut(s) 168, 177, 300, 344, 392, 570, 582
Cfr42I CCGCGG 1 cut(s) 357
CseI GACGC 1 cut(s) 312
CviAII CATG 1 cut(s) 687
DdeI CTNAG 2 cut(s) 66, 267
DpnI GATC 4 cut(s) 183, 203, 252, 515
DpnII GATC 4 cut(s) 181, 201, 250, 513
Eam1104I CTCTTC 2 cut(s) 494, 534
EarI CTCTTC 2 cut(s) 494, 534
EciI GGCGGA 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 263, 408
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoO109I RGGNCCY 2 cut(s) 168, 570
EcoRII CCWGG 4 cut(s) 173, 287, 302, 631
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 690
FaiI YATR 3 cut(s) 669, 688, 700
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 686
FauI CCCGC 3 cut(s) 48, 115, 322
FriOI GRGCYC 1 cut(s) 135
GlaI GCGC 2 cut(s) 12, 224
GsuI CTGGAG 2 cut(s) 157, 559
HaeII RGCGCY 2 cut(s) 14, 226
HaeIII GGCC 7 cut(s) 125, 179, 301, 345, 394, 571, 583
HapII CCGG 4 cut(s) 122, 160, 370, 561
HgaI GACGC 1 cut(s) 312
HhaI GCGC 2 cut(s) 13, 225
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 1 cut(s) 690
Hin6I GCGC 2 cut(s) 11, 223
HinP1I GCGC 2 cut(s) 11, 223
HinfI GANTC 3 cut(s) 137, 143, 680
HpaII CCGG 4 cut(s) 122, 160, 370, 561
Hpy188I TCNGA 7 cut(s) 130, 142, 148, 214, 282, 408, 609
Hpy188III TCNNGA 5 cut(s) 52, 254, 511, 553, 576
Hpy99I CGWCG 2 cut(s) 322, 328
HpyAV CCTTC 5 cut(s) 368, 383, 487, 520, 573
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 31, 421
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 28, 122, 231, 362, 427, 430, 433, 589
HpyF3I CTNAG 2 cut(s) 66, 267
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 690
HspAI GCGC 2 cut(s) 11, 223
KspI CCGCGG 1 cut(s) 357
Kzo9I GATC 4 cut(s) 181, 201, 250, 513
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 7 cut(s) 15, 433, 436, 439, 442, 445, 625
LweI GCATC 2 cut(s) 408, 652
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 652
MalI GATC 4 cut(s) 183, 203, 252, 515
MbiI CCGCTC 1 cut(s) 43
MboI GATC 4 cut(s) 181, 201, 250, 513
MboII GAAGA 5 cut(s) 496, 499, 502, 511, 551
MhlI GDGCHC 2 cut(s) 135, 212
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 171
MspA1I CMGCKG 3 cut(s) 28, 116, 356
MspI CCGG 4 cut(s) 122, 160, 370, 561
MspR9I CCNGG 7 cut(s) 161, 175, 289, 304, 371, 562, 633
MvaI CCWGG 4 cut(s) 175, 289, 304, 633
MvnI CGCG 2 cut(s) 317, 356
MwoI GCNNNNNNNGC 9 cut(s) 19, 28, 122, 231, 362, 427, 430, 433, 589
NciI CCSGG 3 cut(s) 161, 371, 562
NdeII GATC 4 cut(s) 181, 201, 250, 513
NlaIII CATG 1 cut(s) 690
NlaIV GGNNCC 2 cut(s) 169, 384
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 2 cut(s) 143, 680
PflFI GACNNNGTC 2 cut(s) 322, 562
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 168
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 173, 287, 302, 631
PspGI CCWGG 4 cut(s) 173, 287, 302, 631
PspN4I GGNNCC 2 cut(s) 169, 384
PspPI GGNCC 7 cut(s) 168, 177, 300, 344, 392, 570, 582
PspPPI RGGWCCY 1 cut(s) 168
PsyI GACNNNGTC 2 cut(s) 322, 562
PvuI CGATCG 1 cut(s) 184
SacII CCGCGG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 494
Sau3AI GATC 4 cut(s) 181, 201, 250, 513
Sau96I GGNCC 7 cut(s) 168, 177, 300, 344, 392, 570, 582
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 7 cut(s) 161, 175, 289, 304, 371, 562, 633
SduI GDGCHC 2 cut(s) 135, 212
SetI ASST 7 cut(s) 268, 273, 313, 388, 452, 549, 618
SfaNI GCATC 2 cut(s) 408, 652
Sfr303I CCGCGG 1 cut(s) 357
SgrBI CCGCGG 1 cut(s) 357
SinI GGWCC 1 cut(s) 168
Sse9I AATT 1 cut(s) 292
StyD4I CCNGG 7 cut(s) 159, 173, 287, 302, 369, 560, 631
TaiI ACGT 1 cut(s) 549
TaqI TCGA 4 cut(s) 443, 524, 566, 618
TasI AATT 1 cut(s) 292
TauI GCSGC 4 cut(s) 25, 28, 189, 356
TfiI GAWTC 2 cut(s) 143, 680
TscAI CASTG 1 cut(s) 21
TseI GCWGC 7 cut(s) 28, 421, 424, 427, 430, 433, 613
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 2 cut(s) 322, 562
VpaK11BI GGWCC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.