Rroxscaffold_3G00253280

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007755
Physical Location & Seq
Reverse (-)
47330367 .. 47332289
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253280.1

Sequence Viewer

Length: 711 bp
ATGGCAACGGCGCCGGTGAAGCCGCCGCTGCACAACTTCCCGCTATCGTTCTTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACCGCCGCCCCGTCTCCGCAGAGCCCGAACCGTCCGACGATTCCGAGCCGCAACAGCACCACCACCACGGCAATCGCGTCGGATCCCGCACCGCGCGCCACCGCTTCTCGCTCACTTCCTGCTCCGAGAAGCTTCCGAGGCCGCAGAATTCCGAGAAAGAGAGCGAGGACAGCGACGACGACGGTAAGGCCGCGGCCGCCACCGCCGCCGCTGCGGAGGAGGCTGAGGTTCAGAAGCCGTGGAATCTGAGGCCGAGGCGAGCACCGGCTGCGATGACTTCGAAGGCGAATAATACTACTACTGCGAACGGCGAGCTGCACGAGCCGGAGGGTCCGAAGCAGGGCGAGCAGCCGGCGCCGAAGTCGATGAGGCTGAGGGGTTTGGCTGAAGGTCCGAGCATGGAGAAGAAGAAGGAGAAGAGGAAGTTCTGGATCGCTTTGTCAAAGGATGAAATTGAAGAGGACATATTCATCATGACCGGGTCCAGACCCGCCCGGCGGCCCAAGAAGCGGCCCAAGAATGTCCAGAAACAGCTCGATAATTGTTTTCCGGGTTTATGGCTCGTGGGGTTTACAGCTGATGCTTATCGGGGTGCCGATTCTCCGACTAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

9.64

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 178 - 227 4.6e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 10, 448, 686
AccII CGCG 4 cut(s) 171, 188, 190, 287
AclWI GGATC 3 cut(s) 171, 184, 533
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 2 cut(s) 11, 449
AfiI CCNNNNNNNGG 3 cut(s) 434, 591, 603
AgsI TTSAA 2 cut(s) 55, 551
AluBI AGCT 4 cut(s) 226, 409, 628, 671
AluI AGCT 4 cut(s) 226, 409, 628, 671
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 171, 184, 533
AoxI GGCC 6 cut(s) 233, 282, 288, 344, 593, 605
ApeKI GCWGC 5 cut(s) 28, 305, 362, 409, 442
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 4 cut(s) 13, 190, 192, 451
AspS9I GGNCC 5 cut(s) 425, 485, 576, 594, 606
AsuC2I CCSGG 3 cut(s) 574, 589, 645
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 3 cut(s) 425, 485, 576
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 3 cut(s) 10, 448, 686
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 2 cut(s) 413, 656
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 2 cut(s) 318, 467
BbvI GCAGC 5 cut(s) 15, 292, 349, 396, 454
BceAI ACGGC 4 cut(s) 24, 178, 316, 418
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 3 cut(s) 574, 589, 645
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 2 cut(s) 14, 452
Bme1390I CCNGG 3 cut(s) 574, 589, 645
Bme18I GGWCC 3 cut(s) 425, 485, 576
BmgT120I GGNCC 5 cut(s) 425, 485, 576, 594, 606
BmiI GGNNCC 6 cut(s) 12, 178, 426, 450, 577, 688
BmrFI CCNGG 3 cut(s) 574, 589, 645
BmsI GCATC 1 cut(s) 664
Bpu10I CCTNAGC 2 cut(s) 318, 467
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 3 cut(s) 574, 589, 645
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 2 cut(s) 11, 449
BsaJI CCNNGG 5 cut(s) 160, 230, 285, 332, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 591, 603
Bse118I RCCGGY 3 cut(s) 13, 358, 445
Bse8I GATNNNNATC 1 cut(s) 678
BseDI CCNNGG 5 cut(s) 160, 230, 285, 332, 347
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 3 cut(s) 434, 591, 603
BseMII CTCAG 3 cut(s) 309, 332, 458
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 5 cut(s) 15, 292, 349, 396, 454
BsgI GTGCAG 2 cut(s) 14, 395
Bsh1236I CGCG 4 cut(s) 171, 188, 190, 287
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 6 cut(s) 235, 284, 290, 346, 595, 607
BshNI GGYRCC 3 cut(s) 10, 448, 686
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 7 cut(s) 14, 359, 419, 446, 573, 589, 644
BslI CCNNNNNNNGG 3 cut(s) 434, 591, 603
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 6 cut(s) 235, 284, 290, 346, 595, 607
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 120, 358
Bsp143I GATC 2 cut(s) 176, 525
BspANI GGCC 6 cut(s) 235, 284, 290, 346, 595, 607
BspCNI CTCAG 3 cut(s) 310, 333, 459
BspFNI CGCG 4 cut(s) 171, 188, 190, 287
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 6 cut(s) 12, 178, 426, 450, 577, 688
BspPI GGATC 3 cut(s) 171, 184, 533
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 3 cut(s) 10, 448, 686
BsrFI RCCGGY 3 cut(s) 13, 358, 445
BssAI RCCGGY 3 cut(s) 13, 358, 445
BssECI CCNNGG 5 cut(s) 160, 230, 285, 332, 347
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 176, 525
BssNI GRCGYC 2 cut(s) 11, 449
BssSI CACGAG 2 cut(s) 413, 656
Bst2BI CACGAG 2 cut(s) 413, 656
Bst4CI ACNGT 2 cut(s) 126, 278
Bst6I CTCTTC 2 cut(s) 506, 546
BstACI GRCGYC 2 cut(s) 11, 449
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 190, 354, 407, 440, 447
BstDEI CTNAG 4 cut(s) 318, 341, 467, 702
BstDSI CCRYGG 3 cut(s) 160, 285, 332
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 4 cut(s) 171, 188, 190, 287
BstH2I RGCGCY 2 cut(s) 14, 452
BstHHI GCGC 4 cut(s) 13, 190, 192, 451
BstKTI GATC 2 cut(s) 179, 528
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 176, 525
BstMCI CGRYCG 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 572, 587, 643
BstUI CGCG 4 cut(s) 171, 188, 190, 287
BstV1I GCAGC 5 cut(s) 15, 292, 349, 396, 454
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 6 cut(s) 235, 284, 290, 346, 595, 607
BtgI CCRYGG 3 cut(s) 160, 285, 332
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 547
Cac8I GCNNGC 5 cut(s) 190, 354, 407, 440, 447
CciI TCATGA 1 cut(s) 567
CciNI GCGGCCGC 1 cut(s) 288
CfoI GCGC 4 cut(s) 13, 190, 192, 451
Cfr10I RCCGGY 3 cut(s) 13, 358, 445
Cfr13I GGNCC 5 cut(s) 425, 485, 576, 594, 606
Cfr42I CCGCGG 1 cut(s) 288
CseI GACGC 1 cut(s) 160
CviAII CATG 2 cut(s) 493, 568
DdeI CTNAG 4 cut(s) 318, 341, 467, 702
DinI GGCGCC 2 cut(s) 12, 450
DpnI GATC 2 cut(s) 178, 527
DpnII GATC 2 cut(s) 176, 525
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 506, 546
EarI CTCTTC 2 cut(s) 506, 546
EclXI CGGCCG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 425, 485, 576
Eco52I CGGCCG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 2 cut(s) 12, 450
EheI GGCGCC 2 cut(s) 12, 450
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 496, 571
FaiI YATR 4 cut(s) 494, 560, 569, 652
FatI CATG 2 cut(s) 492, 567
FauI CCCGC 3 cut(s) 48, 188, 592
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 4 cut(s) 12, 189, 191, 450
HaeII RGCGCY 2 cut(s) 14, 452
HaeIII GGCC 6 cut(s) 235, 284, 290, 346, 595, 607
HapII CCGG 7 cut(s) 14, 359, 419, 446, 573, 589, 644
HgaI GACGC 1 cut(s) 160
HhaI GCGC 4 cut(s) 13, 190, 192, 451
Hin1I GRCGYC 2 cut(s) 11, 449
Hin1II CATG 2 cut(s) 496, 571
Hin6I GCGC 4 cut(s) 11, 188, 190, 449
HinP1I GCGC 4 cut(s) 11, 188, 190, 449
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 134, 337, 692
HpaII CCGG 7 cut(s) 14, 359, 419, 446, 573, 589, 644
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 666
Hpy188III TCNNGA 5 cut(s) 52, 523, 568, 579, 619
Hpy8I GTNNAC 1 cut(s) 666
Hpy99I CGWCG 5 cut(s) 134, 176, 272, 275, 278
HpyAV CCTTC 3 cut(s) 370, 476, 499
HpyCH4III ACNGT 2 cut(s) 126, 278
HpyCH4V TGCA 2 cut(s) 31, 412
HpyF3I CTNAG 4 cut(s) 318, 341, 467, 702
Hsp92I GRCGYC 2 cut(s) 11, 449
Hsp92II CATG 2 cut(s) 496, 571
HspAI GCGC 4 cut(s) 11, 188, 190, 449
KasI GGCGCC 2 cut(s) 10, 448
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 2 cut(s) 176, 525
LmnI GCTCC 2 cut(s) 63, 221
Lsp1109I GCAGC 5 cut(s) 15, 292, 349, 396, 454
LweI GCATC 1 cut(s) 664
MalI GATC 2 cut(s) 178, 527
MboI GATC 2 cut(s) 176, 525
MboII GAAGA 4 cut(s) 511, 514, 523, 563
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 120, 358
MluCI AATT 3 cut(s) 241, 546, 634
Mly113I GGCGCC 2 cut(s) 11, 449
MmeI TCCRAC 2 cut(s) 153, 154
MroNI GCCGGC 1 cut(s) 445
MspA1I CMGCKG 4 cut(s) 28, 287, 305, 671
MspI CCGG 7 cut(s) 14, 359, 419, 446, 573, 589, 644
MspR9I CCNGG 3 cut(s) 574, 589, 645
MvnI CGCG 4 cut(s) 171, 188, 190, 287
NaeI GCCGGC 1 cut(s) 447
NarI GGCGCC 2 cut(s) 11, 449
NciI CCSGG 3 cut(s) 574, 589, 645
NdeII GATC 2 cut(s) 176, 525
NgoMIV GCCGGC 1 cut(s) 445
NlaIII CATG 2 cut(s) 496, 571
NlaIV GGNNCC 6 cut(s) 12, 178, 426, 450, 577, 688
NmeAIII GCCGAG 1 cut(s) 372
NotI GCGGCCGC 1 cut(s) 288
NspV TTCGAA 1 cut(s) 374
PagI TCATGA 1 cut(s) 567
PauI GCGCGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 134, 337, 692
PflFI GACNNNGTC 1 cut(s) 574
PluTI GGCGCC 2 cut(s) 14, 452
PspN4I GGNNCC 6 cut(s) 12, 178, 426, 450, 577, 688
PspPI GGNCC 5 cut(s) 425, 485, 576, 594, 606
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 574
PteI GCGCGC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 671
SacII CCGCGG 1 cut(s) 288
Sau3AI GATC 2 cut(s) 176, 525
Sau96I GGNCC 5 cut(s) 425, 485, 576, 594, 606
ScrFI CCNGG 3 cut(s) 574, 589, 645
SduI GDGCHC 2 cut(s) 120, 358
SetI ASST 6 cut(s) 228, 324, 411, 487, 630, 673
SfaNI GCATC 1 cut(s) 664
SfoI GGCGCC 2 cut(s) 12, 450
Sfr303I CCGCGG 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 374
SgrAI CRCCGGYG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 3 cut(s) 425, 485, 576
Sse9I AATT 3 cut(s) 241, 546, 634
SspDI GGCGCC 2 cut(s) 10, 448
StyD4I CCNGG 3 cut(s) 572, 587, 643
TaaI ACNGT 2 cut(s) 126, 278
TaqI TCGA 3 cut(s) 374, 458, 630
TasI AATT 3 cut(s) 241, 546, 634
TfiI GAWTC 3 cut(s) 134, 337, 692
TseI GCWGC 5 cut(s) 28, 305, 362, 409, 442
TspDTI ATGAA 2 cut(s) 553, 558
Tth111I GACNNNGTC 1 cut(s) 574
VpaK11BI GGWCC 3 cut(s) 425, 485, 576
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.