RchiOBHm_Chr7g0204161

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007755
Physical Location & Seq
Forward (+)
21737515 .. 21741314
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18272

Sequence Viewer

Length: 738 bp
ATGGCAACAGCGCCGGTGAAGCCGCCGCTGCACAACTTCCCGCTATCGTTCTTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACCGCCGCCCCGTCTCCGCCGAGCCCGAACCGTCCGACGATTCCGAGCAGCCGCACCAGCACCACCACGGCAATCGCGTCGGATCCCGCACCGCGCGCCACCGCTTCTCGCTCACTTCCTGCTCCGAGAAGCTTCCGAGGTCGCAGAATTCCGAGAAAGAGAGCGAGGACAGCGACGACGACGGTAAGGGCGCGGCCGCCACCGCCGCGGCGGCGGAGGAGGCTGAGGTTCAGAAGCCGTGGAATCTGAGGCCGAGGAGAGCACCGGCTTCGATGACGACGGCGATGACTTCGAAGGCGAATAATACTACTACTGCGAACGGCGAGCTGCATGAGCCGGAGGGTCCGAACCCGAACCCGAAGCAGGGCGAGCAGCCGGCGCCGAAGTCGATGAGGCTGAGGGGTTTGGCTGAAGGTCCGAGCATGGAGAAGAAGAAGAAGGAGAAGAGGAAGTTCTGGATCGCTTTGTCTAAGGATGAAATTGAAGAGGACATATTCATCATGACCGGGTCCAGACCCGCCCGGCGGCCCAAGAAGCGGCCCAAGAATGTCCAGAAACAGCTCGATAATTGTTTTCCGGGTTTATGGCTCGTGGGGTTTACAGCTGATGCTTATCGGGGTGCCGATTCTCCGACTAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

245

Amino Acids

27.35

Weight (kDa)

9.69

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 187 - 236 4.9e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 472, 713
AccII CGCG 5 cut(s) 171, 188, 190, 287, 302
AclWI GGATC 3 cut(s) 171, 184, 560
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 457, 458, 618, 630
AgsI TTSAA 2 cut(s) 55, 578
AluBI AGCT 4 cut(s) 226, 421, 655, 698
AluI AGCT 4 cut(s) 226, 421, 655, 698
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 171, 184, 560
AoxI GGCC 4 cut(s) 288, 344, 620, 632
ApeKI GCWGC 4 cut(s) 28, 142, 421, 466
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 5 cut(s) 13, 190, 192, 287, 475
AspS9I GGNCC 5 cut(s) 437, 509, 603, 621, 633
AsuC2I CCSGG 3 cut(s) 601, 616, 672
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 3 cut(s) 437, 509, 603
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 472, 713
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 2 cut(s) 318, 491
BbvI GCAGC 4 cut(s) 15, 154, 408, 478
BceAI ACGGC 4 cut(s) 178, 316, 390, 430
BcgI CGANNNNNNTGC 4 cut(s) 154, 188, 345, 379
BcnI CCSGG 3 cut(s) 601, 616, 672
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 2 cut(s) 14, 476
BglI GCCNNNNNGGC 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 601, 616, 672
Bme18I GGWCC 3 cut(s) 437, 509, 603
BmgT120I GGNCC 5 cut(s) 437, 509, 603, 621, 633
BmiI GGNNCC 5 cut(s) 178, 438, 474, 604, 715
BmrFI CCNGG 3 cut(s) 601, 616, 672
BmsI GCATC 1 cut(s) 691
Bpu10I CCTNAGC 2 cut(s) 318, 491
Bpu14I TTCGAA 1 cut(s) 386
BpuMI CCSGG 3 cut(s) 601, 616, 672
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 473
BsaJI CCNNGG 5 cut(s) 160, 230, 300, 332, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 458, 618, 630
Bse118I RCCGGY 3 cut(s) 13, 358, 469
Bse8I GATNNNNATC 1 cut(s) 705
BseDI CCNNGG 5 cut(s) 160, 230, 300, 332, 347
BseGI GGATG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 457, 458, 618, 630
BseMII CTCAG 3 cut(s) 309, 332, 482
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 326, 364
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 15, 154, 408, 478
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 5 cut(s) 171, 188, 190, 287, 302
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 4 cut(s) 290, 346, 622, 634
BshNI GGYRCC 2 cut(s) 472, 713
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 7 cut(s) 14, 359, 431, 470, 600, 616, 671
BslI CCNNNNNNNGG 4 cut(s) 457, 458, 618, 630
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 4 cut(s) 290, 346, 622, 634
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 120, 358
Bsp143I GATC 2 cut(s) 176, 552
BspANI GGCC 4 cut(s) 290, 346, 622, 634
BspCNI CTCAG 3 cut(s) 310, 333, 483
BspFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 5 cut(s) 178, 438, 474, 604, 715
BspPI GGATC 3 cut(s) 171, 184, 560
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 472, 713
BsrFI RCCGGY 3 cut(s) 13, 358, 469
BssAI RCCGGY 3 cut(s) 13, 358, 469
BssECI CCNNGG 5 cut(s) 160, 230, 300, 332, 347
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 176, 552
BssNI GRCGYC 1 cut(s) 473
BssSI CACGAG 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 126, 278
Bst6I CTCTTC 2 cut(s) 533, 573
BstACI GRCGYC 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 190, 419, 464, 471
BstDEI CTNAG 5 cut(s) 318, 341, 491, 564, 729
BstDSI CCRYGG 3 cut(s) 160, 300, 332
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstH2I RGCGCY 2 cut(s) 14, 476
BstHHI GCGC 5 cut(s) 13, 190, 192, 287, 475
BstKTI GATC 2 cut(s) 179, 555
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 176, 552
BstMCI CGRYCG 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 599, 614, 670
BstUI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstV1I GCAGC 4 cut(s) 15, 154, 408, 478
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 4 cut(s) 290, 346, 622, 634
BtgI CCRYGG 3 cut(s) 160, 300, 332
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 574
Cac8I GCNNGC 4 cut(s) 190, 419, 464, 471
CciI TCATGA 1 cut(s) 594
CciNI GCGGCCGC 1 cut(s) 288
CfoI GCGC 5 cut(s) 13, 190, 192, 287, 475
Cfr10I RCCGGY 3 cut(s) 13, 358, 469
Cfr13I GGNCC 5 cut(s) 437, 509, 603, 621, 633
Cfr42I CCGCGG 1 cut(s) 303
CseI GACGC 1 cut(s) 160
CviAII CATG 3 cut(s) 425, 517, 595
DdeI CTNAG 5 cut(s) 318, 341, 491, 564, 729
DinI GGCGCC 1 cut(s) 474
DpnI GATC 2 cut(s) 178, 554
DpnII GATC 2 cut(s) 176, 552
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 533, 573
EarI CTCTTC 2 cut(s) 533, 573
EciI GGCGGA 2 cut(s) 100, 323
EclXI CGGCCG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 437, 509, 603
Eco52I CGGCCG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 3 cut(s) 428, 520, 598
FaiI YATR 5 cut(s) 426, 518, 587, 596, 679
FatI CATG 3 cut(s) 424, 516, 594
FauI CCCGC 3 cut(s) 48, 188, 619
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 5 cut(s) 12, 189, 191, 286, 474
HaeII RGCGCY 2 cut(s) 14, 476
HaeIII GGCC 4 cut(s) 290, 346, 622, 634
HapII CCGG 7 cut(s) 14, 359, 431, 470, 600, 616, 671
HgaI GACGC 1 cut(s) 160
HhaI GCGC 5 cut(s) 13, 190, 192, 287, 475
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 3 cut(s) 428, 520, 598
Hin6I GCGC 5 cut(s) 11, 188, 190, 285, 473
HinP1I GCGC 5 cut(s) 11, 188, 190, 285, 473
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 134, 337, 719
HpaII CCGG 7 cut(s) 14, 359, 431, 470, 600, 616, 671
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 693
Hpy188III TCNNGA 5 cut(s) 52, 550, 595, 606, 646
Hpy8I GTNNAC 1 cut(s) 693
Hpy99I CGWCG 6 cut(s) 134, 176, 272, 275, 278, 376
HpyAV CCTTC 3 cut(s) 382, 500, 526
HpyCH4III ACNGT 2 cut(s) 126, 278
HpyCH4V TGCA 2 cut(s) 31, 424
HpyF3I CTNAG 5 cut(s) 318, 341, 491, 564, 729
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 3 cut(s) 428, 520, 598
HspAI GCGC 5 cut(s) 11, 188, 190, 285, 473
KasI GGCGCC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 2 cut(s) 176, 552
LmnI GCTCC 2 cut(s) 63, 221
Lsp1109I GCAGC 4 cut(s) 15, 154, 408, 478
LweI GCATC 1 cut(s) 691
MalI GATC 2 cut(s) 178, 554
MboI GATC 2 cut(s) 176, 552
MboII GAAGA 5 cut(s) 535, 538, 541, 550, 590
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 120, 358
MluCI AATT 3 cut(s) 241, 573, 661
Mly113I GGCGCC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 153, 154
MroNI GCCGGC 1 cut(s) 469
MspA1I CMGCKG 3 cut(s) 28, 302, 698
MspI CCGG 7 cut(s) 14, 359, 431, 470, 600, 616, 671
MspR9I CCNGG 3 cut(s) 601, 616, 672
MvnI CGCG 5 cut(s) 171, 188, 190, 287, 302
NaeI GCCGGC 1 cut(s) 471
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 3 cut(s) 601, 616, 672
NdeII GATC 2 cut(s) 176, 552
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 3 cut(s) 428, 520, 598
NlaIV GGNNCC 5 cut(s) 178, 438, 474, 604, 715
NmeAIII GCCGAG 2 cut(s) 139, 372
NotI GCGGCCGC 1 cut(s) 288
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 1 cut(s) 594
PauI GCGCGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 134, 337, 719
PflFI GACNNNGTC 1 cut(s) 601
PluTI GGCGCC 1 cut(s) 476
PspN4I GGNNCC 5 cut(s) 178, 438, 474, 604, 715
PspPI GGNCC 5 cut(s) 437, 509, 603, 621, 633
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 601
PteI GCGCGC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 698
SacII CCGCGG 1 cut(s) 303
Sau3AI GATC 2 cut(s) 176, 552
Sau96I GGNCC 5 cut(s) 437, 509, 603, 621, 633
ScrFI CCNGG 3 cut(s) 601, 616, 672
SduI GDGCHC 2 cut(s) 120, 358
SetI ASST 7 cut(s) 228, 236, 324, 423, 511, 657, 700
SfaNI GCATC 1 cut(s) 691
SfoI GGCGCC 1 cut(s) 474
Sfr303I CCGCGG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 386
SgrAI CRCCGGYG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 3 cut(s) 437, 509, 603
Sse9I AATT 3 cut(s) 241, 573, 661
SspDI GGCGCC 1 cut(s) 472
StyD4I CCNGG 3 cut(s) 599, 614, 670
TaaI ACNGT 2 cut(s) 126, 278
TaqI TCGA 4 cut(s) 365, 386, 482, 657
TasI AATT 3 cut(s) 241, 573, 661
TfiI GAWTC 3 cut(s) 134, 337, 719
TseI GCWGC 4 cut(s) 28, 142, 421, 466
TspDTI ATGAA 2 cut(s) 580, 585
Tth111I GACNNNGTC 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 437, 509, 603
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.