Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007755

Physical Location & Seq

Genomic Coordinates Forward (+)

18851800 .. 18852345

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15242.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGTAGCATCGGTGAAGCCGCCACTGCACAACTTCTCGCTATCCTTCGTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACCGCCGCCTACACCACCGCGTTGGATTCCACACCGCGCGCCACCGCTTCTCGGTCGCTTCCTACTCCGAGAAGGTTCCACAGAGTAACGAGAAAGCTAGCGAGGAGAGCGACAACGACGATGACGCTAAGGCTTTCGCCGTCGCCACGGCGGCTACGACCAAGGAGCTAGAGGTTCAGAAGTCGTGGAATCTGAGGCTGAGGCGAGCACCAGTGACAACGACAATGACTTCGAATTCGGAGGCGAATAATAACACCAGCGGCGAGGTGCATGAGGAGGAGGCTGGGCCGAAGCAGCCGACGCCGAAGTTAGTAGCGGAAGGACCGAGCATGGAGAAGAAGAAGAGGATAGAGAGAGAGAGAGAGAGTAAAGCAGATCTGAACGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

162

Amino Acids

18.08

Weight (kDa)

9.52

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17440 AT4G17440 AT4G17440 AT4G17440
fragaria_vesca	FvH4_3g31902 FvH4_4g15242 FvH4_5g19550
malus_domestica	MD04G1061000.v1.1 MD06G1054500.v1.1
prunus_persica	Prupe.5G064500_v2.0.a1 Prupe.5G064500_v2.0.a1
pyrus_communis	pycom04g05490 pycom06g04570
rosa_chinensis	RchiOBHm_Chr7g0204161
rosa_laevigata	RLG00000003483
rosa_multiflora	Rmu_sc0000571.1_g000026 Rmu_sc0011777.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253280
rosa_rugosa	Rorug07G0081300
rosa_samantha	Rh7AG211200 Rh7BG209900 Rh7CG223800 Rh7DG218100
rosa_wichuraiana	Rw7G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	114, 131, 133
AcsI	RAATTY	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	191, 262
AluI	AGCT	2 cut(s)	191, 262
Alw21I	GWGCWC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	4 cut(s)	307, 313, 339, 345
AspLEI	GCGC	2 cut(s)	133, 135
AspS9I	GGNCC	2 cut(s)	380, 416
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	326
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	400
BceAI	ACGGC	2 cut(s)	218, 258
BcgI	CGANNNNNNTGC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	192, 263
BglI	GCCNNNNNGGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	5 cut(s)	23, 100, 246, 355, 389
BlsI	GCNGC	5 cut(s)	24, 101, 247, 356, 390
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	380, 416
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	1 cut(s)	20
BmtI	GCTAGC	1 cut(s)	195
Bpu10I	CCTNAGC	2 cut(s)	222, 293
Bpu14I	TTCGAA	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	240, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	240, 255
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	278, 284
BseNI	ACTGG	1 cut(s)	305
BsePI	GCGCGC	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	212, 383, 386
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	3 cut(s)	114, 131, 133
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	145
BsnI	GGCC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	469
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	279, 285
BspFNI	CGCG	3 cut(s)	114, 131, 133
BspLI	GGNNCC	1 cut(s)	171
BspOI	GCTAGC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	240, 255
BssHII	GCGCGC	1 cut(s)	131
BssMI	GATC	1 cut(s)	469
BssNI	GRCGYC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	133, 193, 300
BstDEI	CTNAG	3 cut(s)	222, 287, 293
BstDSI	CCRYGG	1 cut(s)	240
BstFNI	CGCG	3 cut(s)	114, 131, 133
BstHHI	GCGC	2 cut(s)	133, 135
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 99, 201, 245, 388, 394
BstUI	CGCG	3 cut(s)	114, 131, 133
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 312
Cac8I	GCNNGC	3 cut(s)	133, 193, 300
CfoI	GCGC	2 cut(s)	133, 135
Cfr13I	GGNCC	2 cut(s)	380, 416
CseI	GACGC	2 cut(s)	227, 403
CviAII	CATG	2 cut(s)	365, 424
CviJI	RGCY	9 cut(s)	22, 191, 227, 248, 262, 292, 377, 382, 391
CviKI_1	RGCY	9 cut(s)	22, 191, 227, 248, 262, 292, 377, 382, 391
DdeI	CTNAG	3 cut(s)	222, 287, 293
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	368, 427
FaiI	YATR	2 cut(s)	366, 425
FatI	CATG	2 cut(s)	364, 423
Fnu4HI	GCNGC	5 cut(s)	23, 100, 246, 355, 389
Fsp4HI	GCNGC	5 cut(s)	23, 100, 246, 355, 389
FspBI	CTAG	2 cut(s)	192, 263
GlaI	GCGC	2 cut(s)	132, 134
GluI	GCNGC	5 cut(s)	23, 100, 246, 355, 389
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	382
HgaI	GACGC	2 cut(s)	227, 403
HhaI	GCGC	2 cut(s)	133, 135
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	368, 427
Hin6I	GCGC	2 cut(s)	131, 133
HinP1I	GCGC	2 cut(s)	131, 133
HinfI	GANTC	2 cut(s)	120, 283
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	5 cut(s)	163, 273, 288, 334, 474
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	3 cut(s)	215, 239, 397
HpyAV	CCTTC	3 cut(s)	58, 160, 407
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	31, 364
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 99, 201, 245, 388, 394
HpyF3I	CTNAG	3 cut(s)	222, 287, 293
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	368, 427
HspAI	GCGC	2 cut(s)	131, 133
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	63, 259
LpnPI	CCDG	3 cut(s)	318, 363, 364
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	192, 263
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	179, 307
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	442, 445, 448
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	354
MvnI	CGCG	3 cut(s)	114, 131, 133
MwoI	GCNNNNNNNGC	6 cut(s)	28, 99, 201, 245, 388, 394
NdeII	GATC	1 cut(s)	469
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	368, 427
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	326
PauI	GCGCGC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	120, 283
PkrI	GCNGC	5 cut(s)	24, 101, 247, 356, 390
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	380, 416
PsuI	RGATCY	1 cut(s)	469
PteI	GCGCGC	1 cut(s)	131
SatI	GCNGC	5 cut(s)	23, 100, 246, 355, 389
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	380, 416
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	171, 193, 264, 270, 363, 480
SfaNI	GCATC	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	192, 263
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	326
TaqII	GACCGA	2 cut(s)	136, 433
TasI	AATT	1 cut(s)	328
TauI	GCSGC	4 cut(s)	25, 102, 248, 357
TfiI	GAWTC	2 cut(s)	120, 283
TscAI	CASTG	2 cut(s)	33, 312
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	307
TspRI	CASTG	2 cut(s)	33, 312
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	328
XspI	CTAG	2 cut(s)	192, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.