Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011777.1

Orthogroup ID

OG0007755

Physical Location & Seq

Genomic Coordinates Reverse (-)

49879 .. 50823

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011777.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcaacagcgccggtgaagccgccgctgcacaacttcccgctatcgttcttgaaatgggggagcaagaaccacaccaacaccaaccaccgctaccgccgccccgtctccgccgagcccgaaccgtccgacgattccgagcagccgccgcagcaccaccacggcaatcgcgtcggatcccgcaccgcgcgccaccgcttctcgctcacttcctgctccgagaagcttcccaggtcgcagaattccgagaaagagagcgaggacagcgacgacgacggtaaggccgcggtcgccaccgccgcggcggcggaggaggctgaggttcagaagccgtggaatctgaggccgaggcgagcaccgacggcgatgacttcgaaggcgaataatactactactgcgaacggcgagctgcatgaaccggagggtccgaacccgaacccgaagcagggcgagcagccggcgccgaagtcgatgaggctgaggggtttggctgaaggtccgagcatggagaagaagaaggagaagaggaagttctggatcgctttgtctaaggatgaaattgaagaggacatattcatcatgaccgggtccagacccgcccggcggcccaagaagcggcccaagaatgtccagaaacagctcgataattgttttccgggtttatggctcgtggggtttaccgccgatgcttatcggggtgctgattctccgactaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

240

Amino Acids

26.83

Weight (kDa)

9.64

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17440 AT4G17440 AT4G17440 AT4G17440
fragaria_vesca	FvH4_3g31902 FvH4_4g15242 FvH4_5g19550
malus_domestica	MD04G1061000.v1.1 MD06G1054500.v1.1
prunus_persica	Prupe.5G064500_v2.0.a1 Prupe.5G064500_v2.0.a1
pyrus_communis	pycom04g05490 pycom06g04570
rosa_chinensis	RchiOBHm_Chr7g0204161
rosa_laevigata	RLG00000003483
rosa_multiflora	Rmu_sc0000571.1_g000026 Rmu_sc0011777.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253280
rosa_rugosa	Rorug07G0081300
rosa_samantha	Rh7AG211200 Rh7BG209900 Rh7CG223800 Rh7DG218100
rosa_wichuraiana	Rw7G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	5 cut(s)	171, 188, 190, 287, 302
AclWI	GGATC	3 cut(s)	171, 184, 545
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	461
AfiI	CCNNNNNNNGG	4 cut(s)	445, 446, 603, 615
AgsI	TTSAA	2 cut(s)	55, 563
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	226, 409, 640
AluI	AGCT	3 cut(s)	226, 409, 640
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	3 cut(s)	171, 184, 545
AoxI	GGCC	4 cut(s)	282, 344, 605, 617
ApeKI	GCWGC	5 cut(s)	28, 142, 151, 409, 454
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	4 cut(s)	13, 190, 192, 463
AspS9I	GGNCC	5 cut(s)	425, 497, 588, 606, 618
AsuC2I	CCSGG	3 cut(s)	586, 601, 657
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	425, 497, 588
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	358
BbvCI	CCTCAGC	2 cut(s)	318, 479
BbvI	GCAGC	5 cut(s)	15, 154, 163, 396, 466
BceAI	ACGGC	4 cut(s)	178, 316, 378, 418
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	586, 601, 657
BcoDI	GTCTC	1 cut(s)	112
BfoI	RGCGCY	2 cut(s)	14, 464
BglI	GCCNNNNNGGC	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	232, 586, 601, 657
Bme18I	GGWCC	3 cut(s)	425, 497, 588
BmgT120I	GGNCC	5 cut(s)	425, 497, 588, 606, 618
BmiI	GGNNCC	4 cut(s)	178, 426, 462, 589
BmrFI	CCNGG	4 cut(s)	232, 586, 601, 657
BmsI	GCATC	1 cut(s)	676
Bpu10I	CCTNAGC	2 cut(s)	318, 479
Bpu14I	TTCGAA	1 cut(s)	374
BpuMI	CCSGG	3 cut(s)	586, 601, 657
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	4 cut(s)	445, 446, 603, 615
Bse118I	RCCGGY	2 cut(s)	13, 457
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	4 cut(s)	445, 446, 603, 615
BseMII	CTCAG	3 cut(s)	309, 332, 470
BsePI	GCGCGC	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	15, 154, 163, 396, 466
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	5 cut(s)	171, 188, 190, 287, 302
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	284, 346, 607, 619
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	6 cut(s)	14, 419, 458, 585, 601, 656
BslI	CCNNNNNNNGG	4 cut(s)	445, 446, 603, 615
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	284, 346, 607, 619
Bsp119I	TTCGAA	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	120, 358
Bsp143I	GATC	2 cut(s)	176, 537
BspANI	GGCC	4 cut(s)	284, 346, 607, 619
BspCNI	CTCAG	3 cut(s)	310, 333, 471
BspFNI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	178, 426, 462, 589
BspPI	GGATC	3 cut(s)	171, 184, 545
BspT104I	TTCGAA	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	13, 457
BssAI	RCCGGY	2 cut(s)	13, 457
BssECI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
BssHII	GCGCGC	1 cut(s)	188
BssMI	GATC	2 cut(s)	176, 537
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	668
Bst2BI	CACGAG	1 cut(s)	668
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	126, 278
Bst6I	CTCTTC	2 cut(s)	518, 558
BstACI	GRCGYC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	374
BstC8I	GCNNGC	5 cut(s)	190, 354, 407, 452, 459
BstDEI	CTNAG	5 cut(s)	318, 341, 479, 549, 714
BstDSI	CCRYGG	4 cut(s)	160, 285, 300, 332
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BstH2I	RGCGCY	2 cut(s)	14, 464
BstHHI	GCGC	4 cut(s)	13, 190, 192, 463
BstKTI	GATC	2 cut(s)	179, 540
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	176, 537
BstMCI	CGRYCG	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	230, 584, 599, 655
BstUI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BstV1I	GCAGC	5 cut(s)	15, 154, 163, 396, 466
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	284, 346, 607, 619
BtgI	CCRYGG	4 cut(s)	160, 285, 300, 332
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	559
Cac8I	GCNNGC	5 cut(s)	190, 354, 407, 452, 459
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	4 cut(s)	13, 190, 192, 463
Cfr10I	RCCGGY	2 cut(s)	13, 457
Cfr13I	GGNCC	5 cut(s)	425, 497, 588, 606, 618
Cfr42I	CCGCGG	2 cut(s)	288, 303
CseI	GACGC	1 cut(s)	160
CviAII	CATG	3 cut(s)	413, 505, 580
DdeI	CTNAG	5 cut(s)	318, 341, 479, 549, 714
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	2 cut(s)	178, 539
DpnII	GATC	2 cut(s)	176, 537
Eam1104I	CTCTTC	2 cut(s)	518, 558
EarI	CTCTTC	2 cut(s)	518, 558
EciI	GGCGGA	2 cut(s)	100, 323
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	425, 497, 588
Eco57I	CTGAAG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	3 cut(s)	416, 508, 583
FaiI	YATR	5 cut(s)	414, 506, 572, 581, 664
FatI	CATG	3 cut(s)	412, 504, 579
FauI	CCCGC	3 cut(s)	48, 188, 604
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	120
GlaI	GCGC	4 cut(s)	12, 189, 191, 462
HaeII	RGCGCY	2 cut(s)	14, 464
HaeIII	GGCC	4 cut(s)	284, 346, 607, 619
HapII	CCGG	6 cut(s)	14, 419, 458, 585, 601, 656
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	4 cut(s)	13, 190, 192, 463
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	416, 508, 583
Hin6I	GCGC	4 cut(s)	11, 188, 190, 461
HinP1I	GCGC	4 cut(s)	11, 188, 190, 461
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	134, 337, 704
HpaII	CCGG	6 cut(s)	14, 419, 458, 585, 601, 656
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188III	TCNNGA	5 cut(s)	52, 535, 580, 591, 631
Hpy8I	GTNNAC	1 cut(s)	678
Hpy99I	CGWCG	6 cut(s)	134, 176, 272, 275, 278, 364
HpyAV	CCTTC	3 cut(s)	370, 488, 511
HpyCH4III	ACNGT	2 cut(s)	126, 278
HpyCH4V	TGCA	2 cut(s)	31, 412
HpyF3I	CTNAG	5 cut(s)	318, 341, 479, 549, 714
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	416, 508, 583
HspAI	GCGC	4 cut(s)	11, 188, 190, 461
KasI	GGCGCC	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
KspI	CCGCGG	2 cut(s)	288, 303
Kzo9I	GATC	2 cut(s)	176, 537
LmnI	GCTCC	2 cut(s)	63, 221
Lsp1109I	GCAGC	5 cut(s)	15, 154, 163, 396, 466
LweI	GCATC	1 cut(s)	676
MalI	GATC	2 cut(s)	178, 539
MboI	GATC	2 cut(s)	176, 537
MboII	GAAGA	4 cut(s)	523, 526, 535, 575
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	120, 358
MluCI	AATT	3 cut(s)	241, 558, 646
Mly113I	GGCGCC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	153, 154
MroNI	GCCGGC	1 cut(s)	457
MspA1I	CMGCKG	3 cut(s)	28, 287, 302
MspI	CCGG	6 cut(s)	14, 419, 458, 585, 601, 656
MspR9I	CCNGG	4 cut(s)	232, 586, 601, 657
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	5 cut(s)	171, 188, 190, 287, 302
NaeI	GCCGGC	1 cut(s)	459
NarI	GGCGCC	1 cut(s)	461
NciI	CCSGG	3 cut(s)	586, 601, 657
NdeII	GATC	2 cut(s)	176, 537
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	416, 508, 583
NlaIV	GGNNCC	4 cut(s)	178, 426, 462, 589
NmeAIII	GCCGAG	2 cut(s)	139, 372
NspV	TTCGAA	1 cut(s)	374
PagI	TCATGA	1 cut(s)	579
PauI	GCGCGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	134, 337, 704
PflFI	GACNNNGTC	1 cut(s)	586
PluTI	GGCGCC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	178, 426, 462, 589
PspPI	GGNCC	5 cut(s)	425, 497, 588, 606, 618
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	586
PteI	GCGCGC	1 cut(s)	188
SacII	CCGCGG	2 cut(s)	288, 303
Sau3AI	GATC	2 cut(s)	176, 537
Sau96I	GGNCC	5 cut(s)	425, 497, 588, 606, 618
ScrFI	CCNGG	4 cut(s)	232, 586, 601, 657
SduI	GDGCHC	2 cut(s)	120, 358
SetI	ASST	6 cut(s)	228, 236, 324, 411, 499, 642
SfaNI	GCATC	1 cut(s)	676
SfoI	GGCGCC	1 cut(s)	462
Sfr303I	CCGCGG	2 cut(s)	288, 303
SfuI	TTCGAA	1 cut(s)	374
SgrAI	CRCCGGYG	1 cut(s)	13
SgrBI	CCGCGG	2 cut(s)	288, 303
SinI	GGWCC	3 cut(s)	425, 497, 588
Sse9I	AATT	3 cut(s)	241, 558, 646
SspDI	GGCGCC	1 cut(s)	460
StyD4I	CCNGG	4 cut(s)	230, 584, 599, 655
TaaI	ACNGT	2 cut(s)	126, 278
TaqI	TCGA	3 cut(s)	374, 470, 642
TasI	AATT	3 cut(s)	241, 558, 646
TfiI	GAWTC	3 cut(s)	134, 337, 704
TseI	GCWGC	5 cut(s)	28, 142, 151, 409, 454
TspDTI	ATGAA	3 cut(s)	429, 565, 570
Tth111I	GACNNNGTC	1 cut(s)	586
VpaK11BI	GGWCC	3 cut(s)	425, 497, 588
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.