Rw7G018380

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007755
Physical Location & Seq
Forward (+)
19759493 .. 19761268
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018380.1

Sequence Viewer

Length: 738 bp
ATGGCAACAGCGCCGGTGAAGCCGCCGCTGCACAACTTCCCGCTATCGTTCTTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACCGCCGCCCCGTCTCCGCCGAGCCCGAACCGTCCGACGATTCCGAGCAGCCGCCGCAGCACCACCACGGCAATCGCGTCGGATCCCGCACCGCGCGCCACCGCTTCTCGCTCACTTCCTGCTCCGAGAAGCTTCCCAGGTCGCAGAATTCCGAGAAAGAGAGCGAGGACAGCGACGACGACGGTAAGGCCGCGGCCGCCACCGCCGCGGCGGCGGAGGAGGCTGAGGTTCAGAAGCCGTGGAATCTGAGGCCGAGGCGAGCACCGGCTGCGATGACTTCGAAGGCGAATAATACTACTACTGCAAACGGCGAGCTGCATGAACCGGAGGGTCCGAACCCGAACCCGAAGCAGGGCGAGCAACCGGCACCGAAGTCGATGAGGCTGAGGGGTTTGGCTGAAGGTCCGAGTATGGAGAAGAAGAAGGAGAAGAGGAAGTTCTGGATCGCTTTGTCTAAGGATGAAATTGAAGAGGACATATTCATCATGACCGGGTCCAGACCCGCCCGGCGGCCCAAGAAGCGGCCCAAGAATGTCCAGAAACAGCTCGATAATTGTTTTCCGGGTTTATGGCTCGTGGGGTTTACCGCTGATGCTTATCGGGGTGCTGATTCTCCGACTAAGCTTTTGCATTTGTATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

245

Amino Acids

27.44

Weight (kDa)

9.64

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 182 - 231 4.9e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 5 cut(s) 171, 188, 190, 287, 302
AclWI GGATC 3 cut(s) 171, 184, 545
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 513
AfiI CCNNNNNNNGG 4 cut(s) 445, 446, 603, 615
AgsI TTSAA 2 cut(s) 55, 563
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 4 cut(s) 226, 409, 640, 718
AluI AGCT 4 cut(s) 226, 409, 640, 718
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 171, 184, 545
AoxI GGCC 5 cut(s) 282, 288, 344, 605, 617
ApeKI GCWGC 5 cut(s) 28, 142, 151, 362, 409
ApoI RAATTY 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AspLEI GCGC 3 cut(s) 13, 190, 192
AspS9I GGNCC 5 cut(s) 425, 497, 588, 606, 618
AsuC2I CCSGG 3 cut(s) 586, 601, 657
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 3 cut(s) 425, 497, 588
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 2 cut(s) 318, 479
BbvI GCAGC 5 cut(s) 15, 154, 163, 349, 396
BceAI ACGGC 3 cut(s) 178, 316, 418
BcgI CGANNNNNNTGC 4 cut(s) 154, 188, 450, 484
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 3 cut(s) 586, 601, 657
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 232, 586, 601, 657
Bme18I GGWCC 3 cut(s) 425, 497, 588
BmgT120I GGNCC 5 cut(s) 425, 497, 588, 606, 618
BmiI GGNNCC 4 cut(s) 178, 426, 462, 589
BmrFI CCNGG 4 cut(s) 232, 586, 601, 657
BmsI GCATC 1 cut(s) 676
Bpu10I CCTNAGC 2 cut(s) 318, 479
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 3 cut(s) 586, 601, 657
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 4 cut(s) 445, 446, 603, 615
Bse118I RCCGGY 3 cut(s) 13, 358, 457
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 4 cut(s) 445, 446, 603, 615
BseMII CTCAG 3 cut(s) 309, 332, 470
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 5 cut(s) 15, 154, 163, 349, 396
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 5 cut(s) 171, 188, 190, 287, 302
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 5 cut(s) 284, 290, 346, 607, 619
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 7 cut(s) 14, 359, 419, 458, 585, 601, 656
BslI CCNNNNNNNGG 4 cut(s) 445, 446, 603, 615
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 5 cut(s) 284, 290, 346, 607, 619
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 120, 358
Bsp143I GATC 2 cut(s) 176, 537
BspANI GGCC 5 cut(s) 284, 290, 346, 607, 619
BspCNI CTCAG 3 cut(s) 310, 333, 471
BspFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 4 cut(s) 178, 426, 462, 589
BspPI GGATC 3 cut(s) 171, 184, 545
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 460
BsrFI RCCGGY 3 cut(s) 13, 358, 457
BssAI RCCGGY 3 cut(s) 13, 358, 457
BssECI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 176, 537
BssSI CACGAG 1 cut(s) 668
Bst2BI CACGAG 1 cut(s) 668
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 126, 278
Bst6I CTCTTC 2 cut(s) 518, 558
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 4 cut(s) 190, 354, 407, 452
BstDEI CTNAG 5 cut(s) 318, 341, 479, 549, 714
BstDSI CCRYGG 4 cut(s) 160, 285, 300, 332
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 3 cut(s) 13, 190, 192
BstKTI GATC 2 cut(s) 179, 540
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 176, 537
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 230, 584, 599, 655
BstUI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstV1I GCAGC 5 cut(s) 15, 154, 163, 349, 396
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 5 cut(s) 284, 290, 346, 607, 619
BtgI CCRYGG 4 cut(s) 160, 285, 300, 332
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 559
Cac8I GCNNGC 4 cut(s) 190, 354, 407, 452
CciI TCATGA 1 cut(s) 579
CciNI GCGGCCGC 1 cut(s) 288
CfoI GCGC 3 cut(s) 13, 190, 192
Cfr10I RCCGGY 3 cut(s) 13, 358, 457
Cfr13I GGNCC 5 cut(s) 425, 497, 588, 606, 618
Cfr42I CCGCGG 2 cut(s) 288, 303
CseI GACGC 1 cut(s) 160
CviAII CATG 2 cut(s) 413, 580
DdeI CTNAG 5 cut(s) 318, 341, 479, 549, 714
DpnI GATC 2 cut(s) 178, 539
DpnII GATC 2 cut(s) 176, 537
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 518, 558
EarI CTCTTC 2 cut(s) 518, 558
EciI GGCGGA 2 cut(s) 100, 323
EclXI CGGCCG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 425, 497, 588
Eco52I CGGCCG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 416, 583
FaiI YATR 6 cut(s) 414, 506, 572, 581, 664, 732
FatI CATG 2 cut(s) 412, 579
FauI CCCGC 3 cut(s) 48, 188, 604
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 3 cut(s) 12, 189, 191
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 5 cut(s) 284, 290, 346, 607, 619
HapII CCGG 7 cut(s) 14, 359, 419, 458, 585, 601, 656
HgaI GACGC 1 cut(s) 160
HhaI GCGC 3 cut(s) 13, 190, 192
Hin1II CATG 2 cut(s) 416, 583
Hin6I GCGC 3 cut(s) 11, 188, 190
HinP1I GCGC 3 cut(s) 11, 188, 190
HindIII AAGCTT 2 cut(s) 224, 716
HinfI GANTC 3 cut(s) 134, 337, 704
HpaII CCGG 7 cut(s) 14, 359, 419, 458, 585, 601, 656
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 678
Hpy188III TCNNGA 5 cut(s) 52, 535, 580, 591, 631
Hpy8I GTNNAC 1 cut(s) 678
Hpy99I CGWCG 5 cut(s) 134, 176, 272, 275, 278
HpyAV CCTTC 3 cut(s) 370, 488, 511
HpyCH4III ACNGT 2 cut(s) 126, 278
HpyCH4V TGCA 4 cut(s) 31, 398, 412, 724
HpyF3I CTNAG 5 cut(s) 318, 341, 479, 549, 714
Hsp92II CATG 2 cut(s) 416, 583
HspAI GCGC 3 cut(s) 11, 188, 190
KspI CCGCGG 2 cut(s) 288, 303
Kzo9I GATC 2 cut(s) 176, 537
LmnI GCTCC 2 cut(s) 63, 221
Lsp1109I GCAGC 5 cut(s) 15, 154, 163, 349, 396
LweI GCATC 1 cut(s) 676
MalI GATC 2 cut(s) 178, 539
MboI GATC 2 cut(s) 176, 537
MboII GAAGA 4 cut(s) 523, 526, 535, 575
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 120, 358
MluCI AATT 3 cut(s) 241, 558, 646
MmeI TCCRAC 3 cut(s) 153, 154, 734
MspA1I CMGCKG 4 cut(s) 28, 287, 302, 683
MspI CCGG 7 cut(s) 14, 359, 419, 458, 585, 601, 656
MspR9I CCNGG 4 cut(s) 232, 586, 601, 657
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 5 cut(s) 171, 188, 190, 287, 302
NciI CCSGG 3 cut(s) 586, 601, 657
NdeII GATC 2 cut(s) 176, 537
NlaIII CATG 2 cut(s) 416, 583
NlaIV GGNNCC 4 cut(s) 178, 426, 462, 589
NmeAIII GCCGAG 2 cut(s) 139, 372
NotI GCGGCCGC 1 cut(s) 288
NspV TTCGAA 1 cut(s) 374
PagI TCATGA 1 cut(s) 579
PauI GCGCGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 3 cut(s) 134, 337, 704
PflFI GACNNNGTC 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 4 cut(s) 178, 426, 462, 589
PspPI GGNCC 5 cut(s) 425, 497, 588, 606, 618
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 586
PteI GCGCGC 1 cut(s) 188
SacII CCGCGG 2 cut(s) 288, 303
Sau3AI GATC 2 cut(s) 176, 537
Sau96I GGNCC 5 cut(s) 425, 497, 588, 606, 618
ScrFI CCNGG 4 cut(s) 232, 586, 601, 657
SduI GDGCHC 2 cut(s) 120, 358
SetI ASST 8 cut(s) 228, 236, 324, 411, 499, 642, 720, 737
SfaNI GCATC 1 cut(s) 676
Sfr303I CCGCGG 2 cut(s) 288, 303
SfuI TTCGAA 1 cut(s) 374
SgrAI CRCCGGYG 1 cut(s) 13
SgrBI CCGCGG 2 cut(s) 288, 303
SinI GGWCC 3 cut(s) 425, 497, 588
Sse9I AATT 3 cut(s) 241, 558, 646
StyD4I CCNGG 4 cut(s) 230, 584, 599, 655
TaaI ACNGT 2 cut(s) 126, 278
TaqI TCGA 3 cut(s) 374, 470, 642
TasI AATT 3 cut(s) 241, 558, 646
TfiI GAWTC 3 cut(s) 134, 337, 704
TseI GCWGC 5 cut(s) 28, 142, 151, 362, 409
TspDTI ATGAA 3 cut(s) 429, 565, 570
Tth111I GACNNNGTC 1 cut(s) 586
VpaK11BI GGWCC 3 cut(s) 425, 497, 588
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.