FvH4_3g31902

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007755
Physical Location & Seq
Reverse (-)
26955160 .. 26955855
696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31902.t1

Sequence Viewer

Length: 294 bp
ATGGCAGCAACGCTGGTGAAGCCGCCACTGCATAACTTCCCTCTATCCTTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACTGCCGCCCCGTCTTCGCCGAGCCCGAGCCTTCGATCGACGATGACCACAACAATTTAGAGTCTCAGTCGCAGCACCACCGCTTCTCGGTCGCTTCCTGCTCCGAGAAGGAGAATAATAACACCGACGGCGAAGTGCATGAGGCGGAGGTTGGGCCGAAGCAGAGCGAGCAGCCGGCGCTGAAGTTGGTCCACATAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

6.02

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 23, 88, 97, 172, 236
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 54, 178
AgsI TTSAA 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 5, 163, 262
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 245, 280
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 17, 175, 274
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 5 cut(s) 6, 23, 97, 164, 263
BlsI GCNGC 5 cut(s) 7, 24, 98, 165, 264
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 245, 280
BpiI GAAGAC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 178
Bse118I RCCGGY 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 54, 178
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 17, 175, 274
Bsh1285I CGRYCG 2 cut(s) 129, 183
BshFI GGCC 1 cut(s) 247
BsiEI CGRYCG 2 cut(s) 129, 183
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 54, 178
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 5 cut(s) 23, 88, 97, 172, 236
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssMI GATC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 260, 267
BstDEI CTNAG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 2 cut(s) 129, 183
BstMWI GCNNNNNNNGC 5 cut(s) 19, 28, 96, 259, 268
BstV1I GCAGC 3 cut(s) 17, 175, 274
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 260, 267
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 245, 280
CviAII CATG 1 cut(s) 230
CviJI RGCY 5 cut(s) 22, 115, 121, 247, 265
CviKI_1 RGCY 5 cut(s) 22, 115, 121, 247, 265
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 1 cut(s) 233
FaiI YATR 3 cut(s) 33, 231, 287
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 6, 23, 97, 164, 263
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 5 cut(s) 6, 23, 97, 164, 263
GlaI GCGC 1 cut(s) 270
GluI GCNGC 5 cut(s) 6, 23, 97, 164, 263
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 247
HapII CCGG 1 cut(s) 266
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 134, 221
HpyAV CCTTC 2 cut(s) 132, 193
HpyCH4V TGCA 2 cut(s) 31, 229
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 28, 96, 259, 268
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 1 cut(s) 269
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 60, 197
LpnPI CCDG 2 cut(s) 202, 279
Lsp1109I GCAGC 3 cut(s) 17, 175, 274
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 3 cut(s) 51, 226, 232
MroNI GCCGGC 1 cut(s) 265
MspI CCGG 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 19, 28, 96, 259, 268
NaeI GCCGGC 1 cut(s) 267
NdeII GATC 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 1 cut(s) 233
NmeAIII GCCGAG 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 267
PkrI GCNGC 5 cut(s) 7, 24, 98, 165, 264
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 245, 280
PvuI CGATCG 1 cut(s) 129
SatI GCNGC 5 cut(s) 6, 23, 97, 164, 263
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 245, 280
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 117
SetI ASST 1 cut(s) 243
SinI GGWCC 1 cut(s) 280
Sse9I AATT 1 cut(s) 145
SsiI CCGC 5 cut(s) 23, 88, 97, 172, 236
TaqI TCGA 2 cut(s) 125, 129
TaqII GACCGA 1 cut(s) 169
TasI AATT 1 cut(s) 145
TauI GCSGC 2 cut(s) 25, 99
TscAI CASTG 1 cut(s) 33
TseI GCWGC 3 cut(s) 5, 163, 262
TspRI CASTG 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.