FvH4_5g19550

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007755
Physical Location & Seq
Forward (+)
11369659 .. 11370563
905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19550.t1

Sequence Viewer

Length: 720 bp
ATGGCAACAGCGCCGGTGAAGCCGCCGCTGCACAACTTCCCGCTATCCTTCTTGAAATGGGGGAGTAAGAACCACACCAACACCAACCACCGCTACCGCCGCCCCGTCTCCGCCGAGCCCGAGCCTTCCGCCGACGACGACCGCAACGATTCCGAGTCTCCGCCGCAGCACCACCGCGTCGGATCCCGCACCGCGCGCCACCGCTTCTCGCTCGCTTCCTGCTCCGAGAAGCTTCCGCAGAGAAACGAGAAAGCCAGCGAGGAGAGCGACGACGACGTTGACGACGACGCTAAGGCTGCCGCCGTCGCCGCGGTGGCTGCGGCCGAGGAGGCGGAGGTTCAGAAGCCGTGGAATCTGAGGCCGAGGCGAGCACCGGTGACGAAGGCGAATAACAACACCGGCGGCGAGGTGCATGAGGCGGAGGGGACGAAGCAGAGCGAGCAGCCGGCGCCGAAGTCGATGAGGCTGAGGGGGTTGGCGGCGGCGGCGGAAGGACCGAGCATGGAGAAGAAGAAGGAGAAGAGGAAGTTCTGGATCGCTTTGTCTAAGGATGAAATTGAAGAGGACATATTCATCATGACCGGGTCTCGACCCGCCCGGCGGCCCAAGAAGCGCCCCAAGAACGTCCAGAAGCAGCTCGATAACTGCTTTCCGGGTTTGTGGCTGGTGGGGTTTACTGCTGATGCTTATCGCGGTTCCGATTCTCCAACTAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

240

Amino Acids

26.62

Weight (kDa)

9.37

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 181 - 230 4.7e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 448
AccII CGCG 5 cut(s) 177, 194, 196, 311, 693
AclWI GGATC 3 cut(s) 177, 190, 542
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 373
AgsI TTSAA 2 cut(s) 55, 560
AluBI AGCT 2 cut(s) 232, 637
AluI AGCT 2 cut(s) 232, 637
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 112, 162, 591
AlwI GGATC 3 cut(s) 177, 190, 542
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 3 cut(s) 321, 359, 602
ApeKI GCWGC 6 cut(s) 28, 166, 296, 317, 442, 634
AsiGI ACCGGT 1 cut(s) 373
AspLEI GCGC 5 cut(s) 13, 196, 198, 451, 615
AspS9I GGNCC 2 cut(s) 494, 603
AsuC2I CCSGG 3 cut(s) 583, 598, 654
AsuHPI GGTGA 2 cut(s) 28, 388
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 494
BamHI GGATCC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 467
BbvI GCAGC 6 cut(s) 15, 178, 283, 304, 454, 646
BceAI ACGGC 2 cut(s) 287, 331
BcnI CCSGG 3 cut(s) 583, 598, 654
BcoDI GTCTC 3 cut(s) 112, 162, 591
BfoI RGCGCY 3 cut(s) 14, 452, 616
BglI GCCNNNNNGGC 2 cut(s) 314, 329
Bme1390I CCNGG 3 cut(s) 583, 598, 654
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 494, 603
BmiI GGNNCC 3 cut(s) 184, 450, 697
BmrFI CCNGG 3 cut(s) 583, 598, 654
BmsI GCATC 1 cut(s) 673
Bpu10I CCTNAGC 2 cut(s) 291, 467
BpuMI CCSGG 3 cut(s) 583, 598, 654
BsaBI GATNNNNATC 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 309, 324, 347, 362
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 4 cut(s) 13, 373, 398, 445
Bse8I GATNNNNATC 1 cut(s) 687
BseDI CCNNGG 4 cut(s) 309, 324, 347, 362
BseGI GGATG 1 cut(s) 556
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 2 cut(s) 347, 458
BsePI GCGCGC 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 275, 341
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 6 cut(s) 15, 178, 283, 304, 454, 646
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 5 cut(s) 177, 194, 196, 311, 693
Bsh1285I CGRYCG 2 cut(s) 142, 324
BshFI GGCC 3 cut(s) 323, 361, 604
BshNI GGYRCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 373
BsiEI CGRYCG 2 cut(s) 142, 324
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 7 cut(s) 14, 374, 399, 446, 582, 598, 653
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 3 cut(s) 112, 162, 591
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 323, 361, 604
Bso31I GGTCTC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 120, 373
Bsp143I GATC 2 cut(s) 182, 534
BspANI GGCC 3 cut(s) 323, 361, 604
BspCNI CTCAG 2 cut(s) 348, 459
BspFNI CGCG 5 cut(s) 177, 194, 196, 311, 693
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 184, 450, 697
BspPI GGATC 3 cut(s) 177, 190, 542
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 591
BsrFI RCCGGY 4 cut(s) 13, 373, 398, 445
BssAI RCCGGY 4 cut(s) 13, 373, 398, 445
BssECI CCNNGG 4 cut(s) 309, 324, 347, 362
BssHII GCGCGC 1 cut(s) 194
BssMI GATC 2 cut(s) 182, 534
BssNI GRCGYC 1 cut(s) 449
Bst6I CTCTTC 2 cut(s) 515, 555
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 6 cut(s) 196, 213, 256, 369, 440, 447
BstDEI CTNAG 5 cut(s) 291, 356, 467, 546, 711
BstDSI CCRYGG 2 cut(s) 309, 347
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 5 cut(s) 177, 194, 196, 311, 693
BstH2I RGCGCY 3 cut(s) 14, 452, 616
BstHHI GCGC 5 cut(s) 13, 196, 198, 451, 615
BstKTI GATC 2 cut(s) 185, 537
BstMAI GTCTC 3 cut(s) 112, 162, 591
BstMBI GATC 2 cut(s) 182, 534
BstMCI CGRYCG 2 cut(s) 142, 324
BstSCI CCNGG 3 cut(s) 581, 596, 652
BstUI CGCG 5 cut(s) 177, 194, 196, 311, 693
BstV1I GCAGC 6 cut(s) 15, 178, 283, 304, 454, 646
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 3 cut(s) 323, 361, 604
BtgI CCRYGG 2 cut(s) 309, 347
BtsCI GGATG 1 cut(s) 556
Cac8I GCNNGC 6 cut(s) 196, 213, 256, 369, 440, 447
CciI TCATGA 1 cut(s) 576
CfoI GCGC 5 cut(s) 13, 196, 198, 451, 615
Cfr10I RCCGGY 4 cut(s) 13, 373, 398, 445
Cfr13I GGNCC 2 cut(s) 494, 603
Cfr42I CCGCGG 1 cut(s) 312
CseI GACGC 2 cut(s) 166, 296
CspAI ACCGGT 1 cut(s) 373
CviAII CATG 3 cut(s) 413, 502, 577
DdeI CTNAG 5 cut(s) 291, 356, 467, 546, 711
DinI GGCGCC 1 cut(s) 450
DpnI GATC 2 cut(s) 184, 536
DpnII GATC 2 cut(s) 182, 534
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 515, 555
EarI CTCTTC 2 cut(s) 515, 555
EciI GGCGGA 6 cut(s) 100, 118, 150, 347, 434, 503
EclXI CGGCCG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 494
Eco52I CGGCCG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 3 cut(s) 416, 505, 580
FaiI YATR 4 cut(s) 414, 503, 569, 578
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 412, 501, 576
FauI CCCGC 3 cut(s) 48, 194, 601
FokI GGATG 1 cut(s) 563
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 5 cut(s) 12, 195, 197, 450, 614
HaeII RGCGCY 3 cut(s) 14, 452, 616
HaeIII GGCC 3 cut(s) 323, 361, 604
HapII CCGG 7 cut(s) 14, 374, 399, 446, 582, 598, 653
HgaI GACGC 2 cut(s) 166, 296
HhaI GCGC 5 cut(s) 13, 196, 198, 451, 615
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 3 cut(s) 416, 505, 580
Hin6I GCGC 5 cut(s) 11, 194, 196, 449, 613
HinP1I GCGC 5 cut(s) 11, 194, 196, 449, 613
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 149, 155, 352, 701
HpaII CCGG 7 cut(s) 14, 374, 399, 446, 582, 598, 653
HphI GGTGA 2 cut(s) 28, 388
Hpy166II GTNNAC 2 cut(s) 280, 675
Hpy188I TCNGA 6 cut(s) 154, 182, 226, 342, 357, 700
Hpy188III TCNNGA 5 cut(s) 52, 532, 577, 588, 628
Hpy8I GTNNAC 2 cut(s) 280, 675
Hpy99I CGWCG 9 cut(s) 137, 140, 182, 272, 275, 278, 287, 290, 308
HpyAV CCTTC 5 cut(s) 58, 135, 376, 485, 508
HpyCH4IV ACGT 2 cut(s) 276, 624
HpyCH4V TGCA 2 cut(s) 31, 412
HpyF3I CTNAG 5 cut(s) 291, 356, 467, 546, 711
HpySE526I ACGT 2 cut(s) 276, 624
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 3 cut(s) 416, 505, 580
HspAI GCGC 5 cut(s) 11, 194, 196, 449, 613
KasI GGCGCC 1 cut(s) 448
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
KspI CCGCGG 1 cut(s) 312
Kzo9I GATC 2 cut(s) 182, 534
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 6 cut(s) 15, 178, 283, 304, 454, 646
LweI GCATC 1 cut(s) 673
MaeII ACGT 2 cut(s) 276, 624
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 184, 536
MboI GATC 2 cut(s) 182, 534
MboII GAAGA 4 cut(s) 520, 523, 532, 572
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 120, 373
MluCI AATT 1 cut(s) 555
Mly113I GGCGCC 1 cut(s) 449
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 445
MspA1I CMGCKG 2 cut(s) 28, 311
MspI CCGG 7 cut(s) 14, 374, 399, 446, 582, 598, 653
MspR9I CCNGG 3 cut(s) 583, 598, 654
MvnI CGCG 5 cut(s) 177, 194, 196, 311, 693
NaeI GCCGGC 1 cut(s) 447
NarI GGCGCC 1 cut(s) 449
NciI CCSGG 3 cut(s) 583, 598, 654
NdeII GATC 2 cut(s) 182, 534
NgoMIV GCCGGC 1 cut(s) 445
NlaIII CATG 3 cut(s) 416, 505, 580
NlaIV GGNNCC 3 cut(s) 184, 450, 697
NmeAIII GCCGAG 3 cut(s) 139, 349, 387
NmuCI GTSAC 1 cut(s) 376
PagI TCATGA 1 cut(s) 576
PauI GCGCGC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 279, 282
PdiI GCCGGC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 149, 352, 701
PflFI GACNNNGTC 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 373
PleI GAGTC 1 cut(s) 163
PluTI GGCGCC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 184, 450, 697
PspPI GGNCC 2 cut(s) 494, 603
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 583
PteI GCGCGC 1 cut(s) 194
SacII CCGCGG 1 cut(s) 312
Sau3AI GATC 2 cut(s) 182, 534
Sau96I GGNCC 2 cut(s) 494, 603
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 583, 598, 654
SduI GDGCHC 2 cut(s) 120, 373
SetI ASST 6 cut(s) 234, 279, 339, 411, 627, 639
SfaNI GCATC 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 312
SgrAI CRCCGGYG 3 cut(s) 13, 373, 398
SgrBI CCGCGG 1 cut(s) 312
SinI GGWCC 1 cut(s) 494
Sse9I AATT 1 cut(s) 555
SspDI GGCGCC 1 cut(s) 448
StyD4I CCNGG 3 cut(s) 581, 596, 652
TaiI ACGT 2 cut(s) 279, 627
TaqI TCGA 3 cut(s) 458, 589, 639
TaqII GACCGA 1 cut(s) 511
TasI AATT 1 cut(s) 555
TfiI GAWTC 3 cut(s) 149, 352, 701
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 6 cut(s) 28, 166, 296, 317, 442, 634
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 562, 567
Tth111I GACNNNGTC 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.