RLG00000003483

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007755
Physical Location & Seq
Reverse (-)
49057944 .. 49058881
938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003483

Sequence Viewer

Length: 732 bp
ATGGCAACAGCGCCGGTGAAGCCGCCGCTGCACAACTTTCCGCTATCGTTCTTGAAATGGGGGAGCAAGAACCACACCAACACCAACCACCGCTACCGCCGCCCCGTCTCCGCCGAGCCCGAACCGTCCGACGATTCCGAGCCGCAGCCGCACCACCACCACGGCAATCGCGTCGGATCCCGCACCGCGCGCCACCGCTTCTCGCTCACTTCCTGCTCCGAGAAGCTTCCGAGGCCGCAGAATTCCGAGAAAGAGAGCGAGGACAGCGACGACGACGGTAAGGCCGCGGCCGCGGCCGCCGCCGTCGCGGAGGAGGCCGAGGTTCAGAAGCCGTGGAATCTGAGGCCGAGGCGAGCACCGGCTTCGATGACGACGGCGATGACTTCGAAGGCTAATAATACTACTACTGCGAACGGCGAGCTGCATGAGCCGGAGGGTCCGAACCCGAACCCGAAGCAGGGGGAGCAGCCGGCGCCGAAGTCGATGAGGCTGAGGGGTTTGGCTGAAGGTCCGAGCATGGAGAAGAAGGAGAAGAGGAAGTTCTGGATCGCTTTGTCTAAGGATGAAATTGAAGAGGACATATTCATCATGACCGGGTCCAGACCCGCCCGGCGGCCCAAGAAGCGGCCCAAGAATGTCCAGAAACAGCTCGATAATTGTTTTCCGGGTTTATGGCTCGTGGGGTTTACCGCTGATGCTTATCGGGGTGCCGATTCTCCGACTAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

244

Amino Acids

27.08

Weight (kDa)

9.58

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 185 - 234 4.9e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 472, 707
AccII CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
AclWI GGATC 3 cut(s) 171, 184, 554
AcoI YGGCCR 2 cut(s) 288, 294
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 457, 458, 612, 624
AgsI TTSAA 2 cut(s) 55, 572
AluBI AGCT 3 cut(s) 226, 421, 649
AluI AGCT 3 cut(s) 226, 421, 649
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 171, 184, 554
AoxI GGCC 8 cut(s) 233, 282, 288, 294, 315, 344, 614, 626
ApeKI GCWGC 4 cut(s) 28, 145, 421, 466
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 4 cut(s) 13, 190, 192, 475
AspS9I GGNCC 5 cut(s) 437, 509, 597, 615, 627
AsuC2I CCSGG 3 cut(s) 595, 610, 666
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 3 cut(s) 437, 509, 597
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 472, 707
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 4 cut(s) 15, 157, 408, 478
BceAI ACGGC 5 cut(s) 178, 287, 316, 390, 430
BcgI CGANNNNNNTGC 4 cut(s) 154, 188, 345, 379
BcnI CCSGG 3 cut(s) 595, 610, 666
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 2 cut(s) 14, 476
Bme1390I CCNGG 3 cut(s) 595, 610, 666
Bme18I GGWCC 3 cut(s) 437, 509, 597
BmgT120I GGNCC 5 cut(s) 437, 509, 597, 615, 627
BmiI GGNNCC 5 cut(s) 178, 438, 474, 598, 709
BmrFI CCNGG 3 cut(s) 595, 610, 666
BmsI GCATC 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 386
BpuMI CCSGG 3 cut(s) 595, 610, 666
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 473
BsaJI CCNNGG 7 cut(s) 160, 230, 285, 291, 318, 332, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 458, 612, 624
Bse118I RCCGGY 3 cut(s) 13, 358, 469
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 7 cut(s) 160, 230, 285, 291, 318, 332, 347
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 4 cut(s) 457, 458, 612, 624
BseMII CTCAG 2 cut(s) 332, 482
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 2 cut(s) 288, 294
BseXI GCAGC 4 cut(s) 15, 157, 408, 478
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
Bsh1285I CGRYCG 2 cut(s) 291, 297
BshFI GGCC 8 cut(s) 235, 284, 290, 296, 317, 346, 616, 628
BshNI GGYRCC 2 cut(s) 472, 707
BsiEI CGRYCG 2 cut(s) 291, 297
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 7 cut(s) 14, 359, 431, 470, 594, 610, 665
BslI CCNNNNNNNGG 4 cut(s) 457, 458, 612, 624
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 8 cut(s) 235, 284, 290, 296, 317, 346, 616, 628
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 120, 358
Bsp143I GATC 2 cut(s) 176, 546
BspANI GGCC 8 cut(s) 235, 284, 290, 296, 317, 346, 616, 628
BspCNI CTCAG 2 cut(s) 333, 483
BspFNI CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 5 cut(s) 178, 438, 474, 598, 709
BspPI GGATC 3 cut(s) 171, 184, 554
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 472, 707
BsrFI RCCGGY 3 cut(s) 13, 358, 469
BssAI RCCGGY 3 cut(s) 13, 358, 469
BssECI CCNNGG 7 cut(s) 160, 230, 285, 291, 318, 332, 347
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 176, 546
BssNI GRCGYC 1 cut(s) 473
BssSI CACGAG 1 cut(s) 677
Bst2BI CACGAG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 126, 278
Bst6I CTCTTC 2 cut(s) 527, 567
BstACI GRCGYC 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 190, 354, 419, 471
BstDEI CTNAG 4 cut(s) 341, 491, 558, 723
BstDSI CCRYGG 4 cut(s) 160, 285, 291, 332
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
BstH2I RGCGCY 2 cut(s) 14, 476
BstHHI GCGC 4 cut(s) 13, 190, 192, 475
BstKTI GATC 2 cut(s) 179, 549
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 176, 546
BstMCI CGRYCG 2 cut(s) 291, 297
BstSCI CCNGG 3 cut(s) 593, 608, 664
BstUI CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
BstV1I GCAGC 4 cut(s) 15, 157, 408, 478
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZI CGGCCG 2 cut(s) 288, 294
BsuRI GGCC 8 cut(s) 235, 284, 290, 296, 317, 346, 616, 628
BtgI CCRYGG 4 cut(s) 160, 285, 291, 332
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 190, 354, 419, 471
CciI TCATGA 1 cut(s) 588
CciNI GCGGCCGC 2 cut(s) 288, 294
CfoI GCGC 4 cut(s) 13, 190, 192, 475
Cfr10I RCCGGY 3 cut(s) 13, 358, 469
Cfr13I GGNCC 5 cut(s) 437, 509, 597, 615, 627
Cfr42I CCGCGG 2 cut(s) 288, 294
CseI GACGC 1 cut(s) 160
CviAII CATG 3 cut(s) 425, 517, 589
DdeI CTNAG 4 cut(s) 341, 491, 558, 723
DinI GGCGCC 1 cut(s) 474
DpnI GATC 2 cut(s) 178, 548
DpnII GATC 2 cut(s) 176, 546
EaeI YGGCCR 2 cut(s) 288, 294
EagI CGGCCG 2 cut(s) 288, 294
Eam1104I CTCTTC 2 cut(s) 527, 567
EarI CTCTTC 2 cut(s) 527, 567
EciI GGCGGA 1 cut(s) 100
EclXI CGGCCG 2 cut(s) 288, 294
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 437, 509, 597
Eco52I CGGCCG 2 cut(s) 288, 294
Eco57I CTGAAG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 3 cut(s) 428, 520, 592
FaiI YATR 5 cut(s) 426, 518, 581, 590, 673
FatI CATG 3 cut(s) 424, 516, 588
FauI CCCGC 2 cut(s) 188, 613
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 4 cut(s) 12, 189, 191, 474
HaeII RGCGCY 2 cut(s) 14, 476
HaeIII GGCC 8 cut(s) 235, 284, 290, 296, 317, 346, 616, 628
HapII CCGG 7 cut(s) 14, 359, 431, 470, 594, 610, 665
HgaI GACGC 1 cut(s) 160
HhaI GCGC 4 cut(s) 13, 190, 192, 475
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 3 cut(s) 428, 520, 592
Hin6I GCGC 4 cut(s) 11, 188, 190, 473
HinP1I GCGC 4 cut(s) 11, 188, 190, 473
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 134, 337, 713
HpaII CCGG 7 cut(s) 14, 359, 431, 470, 594, 610, 665
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 687
Hpy188III TCNNGA 5 cut(s) 52, 544, 589, 600, 640
Hpy8I GTNNAC 1 cut(s) 687
Hpy99I CGWCG 7 cut(s) 134, 176, 272, 275, 278, 308, 376
HpyAV CCTTC 3 cut(s) 382, 500, 520
HpyCH4III ACNGT 2 cut(s) 126, 278
HpyCH4V TGCA 2 cut(s) 31, 424
HpyF3I CTNAG 4 cut(s) 341, 491, 558, 723
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 3 cut(s) 428, 520, 592
HspAI GCGC 4 cut(s) 11, 188, 190, 473
KasI GGCGCC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
KspI CCGCGG 2 cut(s) 288, 294
Kzo9I GATC 2 cut(s) 176, 546
LmnI GCTCC 3 cut(s) 63, 221, 463
Lsp1109I GCAGC 4 cut(s) 15, 157, 408, 478
LweI GCATC 1 cut(s) 685
MalI GATC 2 cut(s) 178, 548
MboI GATC 2 cut(s) 176, 546
MboII GAAGA 3 cut(s) 535, 544, 584
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 120, 358
MluCI AATT 3 cut(s) 241, 567, 655
Mly113I GGCGCC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 153, 154
MroNI GCCGGC 1 cut(s) 469
MspA1I CMGCKG 4 cut(s) 28, 287, 293, 692
MspI CCGG 7 cut(s) 14, 359, 431, 470, 594, 610, 665
MspR9I CCNGG 3 cut(s) 595, 610, 666
MvnI CGCG 6 cut(s) 171, 188, 190, 287, 293, 308
NaeI GCCGGC 1 cut(s) 471
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 3 cut(s) 595, 610, 666
NdeII GATC 2 cut(s) 176, 546
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 3 cut(s) 428, 520, 592
NlaIV GGNNCC 5 cut(s) 178, 438, 474, 598, 709
NmeAIII GCCGAG 3 cut(s) 139, 343, 372
NotI GCGGCCGC 2 cut(s) 288, 294
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 1 cut(s) 588
PauI GCGCGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 134, 337, 713
PflFI GACNNNGTC 1 cut(s) 595
PluTI GGCGCC 1 cut(s) 476
PspN4I GGNNCC 5 cut(s) 178, 438, 474, 598, 709
PspPI GGNCC 5 cut(s) 437, 509, 597, 615, 627
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 595
PteI GCGCGC 1 cut(s) 188
SacII CCGCGG 2 cut(s) 288, 294
Sau3AI GATC 2 cut(s) 176, 546
Sau96I GGNCC 5 cut(s) 437, 509, 597, 615, 627
ScrFI CCNGG 3 cut(s) 595, 610, 666
SduI GDGCHC 2 cut(s) 120, 358
SetI ASST 5 cut(s) 228, 324, 423, 511, 651
SfaNI GCATC 1 cut(s) 685
SfoI GGCGCC 1 cut(s) 474
Sfr303I CCGCGG 2 cut(s) 288, 294
SfuI TTCGAA 1 cut(s) 386
SgrAI CRCCGGYG 1 cut(s) 13
SgrBI CCGCGG 2 cut(s) 288, 294
SinI GGWCC 3 cut(s) 437, 509, 597
Sse9I AATT 3 cut(s) 241, 567, 655
SspDI GGCGCC 1 cut(s) 472
StyD4I CCNGG 3 cut(s) 593, 608, 664
TaaI ACNGT 2 cut(s) 126, 278
TaqI TCGA 4 cut(s) 365, 386, 482, 651
TasI AATT 3 cut(s) 241, 567, 655
TfiI GAWTC 3 cut(s) 134, 337, 713
TseI GCWGC 4 cut(s) 28, 145, 421, 466
TspDTI ATGAA 2 cut(s) 574, 579
Tth111I GACNNNGTC 1 cut(s) 595
VpaK11BI GGWCC 3 cut(s) 437, 509, 597
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.