Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000571.1

Orthogroup ID

OG0007755

Physical Location & Seq

Genomic Coordinates Reverse (-)

117572 .. 118517

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000571.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcaacagcgccggtgaagccgccgctgcacaacttcccgctatcgttcttgaaatgggggagcaagaaccacaccaacaccaaccaccgctaccgccgccccgtctccgccgagcccgaaccgtccgacgattccgagcagccgccgcagcaccaccacggcaatcgcgtcggatcccgcaccgcgcgccaccgcttctcgctcacttcctgctccgagaagcttcccaggtcgcagaattccgagaaagagagcgaggacagcgacgacgacggtaaggccgcggtcgccaccgccgcggcggcggaggaggctgaggttcagaagccgtggaatctgaggccgaggcgagcaccgacggcgatgacttcgaaggcgaataatactactactgcaaacggcgagctgcatgagccggagggtccgaacccgaacccgaacccgaagcagggcgagcagccggcgccgaagtcgatgaggctgaggggtttggctgaaggtccgagcatggagaagaagaaggagaagaggaagttctggatcgctttgtctaaggatgaaattgaagaggacatattcatcatgaccgggtccagacccgcccggcggcccaagaagcggcccaagaatgtccagaaacagctcgataattgttttccgggtttatggctcgtggggtttaccgctgatgcttatcggggtgctgattctccgactaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

9.64

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17440 AT4G17440 AT4G17440 AT4G17440
fragaria_vesca	FvH4_3g31902 FvH4_4g15242 FvH4_5g19550
malus_domestica	MD04G1061000.v1.1 MD06G1054500.v1.1
prunus_persica	Prupe.5G064500_v2.0.a1 Prupe.5G064500_v2.0.a1
pyrus_communis	pycom04g05490 pycom06g04570
rosa_chinensis	RchiOBHm_Chr7g0204161
rosa_laevigata	RLG00000003483
rosa_multiflora	Rmu_sc0000571.1_g000026 Rmu_sc0011777.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253280
rosa_rugosa	Rorug07G0081300
rosa_samantha	Rh7AG211200 Rh7BG209900 Rh7CG223800 Rh7DG218100
rosa_wichuraiana	Rw7G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccII	CGCG	5 cut(s)	171, 188, 190, 287, 302
AclWI	GGATC	3 cut(s)	171, 184, 551
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	451, 452, 609, 621
AgsI	TTSAA	2 cut(s)	55, 569
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	226, 409, 646
AluI	AGCT	3 cut(s)	226, 409, 646
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	3 cut(s)	171, 184, 551
AoxI	GGCC	4 cut(s)	282, 344, 611, 623
ApeKI	GCWGC	5 cut(s)	28, 142, 151, 409, 460
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	4 cut(s)	13, 190, 192, 469
AspS9I	GGNCC	5 cut(s)	425, 503, 594, 612, 624
AsuC2I	CCSGG	3 cut(s)	592, 607, 663
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	425, 503, 594
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	358
BbvCI	CCTCAGC	2 cut(s)	318, 485
BbvI	GCAGC	5 cut(s)	15, 154, 163, 396, 472
BceAI	ACGGC	4 cut(s)	178, 316, 378, 418
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	592, 607, 663
BcoDI	GTCTC	1 cut(s)	112
BfoI	RGCGCY	2 cut(s)	14, 470
BglI	GCCNNNNNGGC	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	232, 592, 607, 663
Bme18I	GGWCC	3 cut(s)	425, 503, 594
BmgT120I	GGNCC	5 cut(s)	425, 503, 594, 612, 624
BmiI	GGNNCC	4 cut(s)	178, 426, 468, 595
BmrFI	CCNGG	4 cut(s)	232, 592, 607, 663
BmsI	GCATC	1 cut(s)	682
Bpu10I	CCTNAGC	2 cut(s)	318, 485
Bpu14I	TTCGAA	1 cut(s)	374
BpuMI	CCSGG	3 cut(s)	592, 607, 663
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 452, 609, 621
Bse118I	RCCGGY	2 cut(s)	13, 463
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	451, 452, 609, 621
BseMII	CTCAG	3 cut(s)	309, 332, 476
BsePI	GCGCGC	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	15, 154, 163, 396, 472
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	5 cut(s)	171, 188, 190, 287, 302
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	284, 346, 613, 625
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	6 cut(s)	14, 419, 464, 591, 607, 662
BslI	CCNNNNNNNGG	4 cut(s)	451, 452, 609, 621
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	284, 346, 613, 625
Bsp119I	TTCGAA	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	120, 358
Bsp143I	GATC	2 cut(s)	176, 543
BspANI	GGCC	4 cut(s)	284, 346, 613, 625
BspCNI	CTCAG	3 cut(s)	310, 333, 477
BspFNI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	4 cut(s)	178, 426, 468, 595
BspPI	GGATC	3 cut(s)	171, 184, 551
BspT104I	TTCGAA	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	13, 463
BssAI	RCCGGY	2 cut(s)	13, 463
BssECI	CCNNGG	6 cut(s)	160, 230, 285, 300, 332, 347
BssHII	GCGCGC	1 cut(s)	188
BssMI	GATC	2 cut(s)	176, 543
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	126, 278
Bst6I	CTCTTC	2 cut(s)	524, 564
BstACI	GRCGYC	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	374
BstC8I	GCNNGC	5 cut(s)	190, 354, 407, 458, 465
BstDEI	CTNAG	5 cut(s)	318, 341, 485, 555, 720
BstDSI	CCRYGG	4 cut(s)	160, 285, 300, 332
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BstH2I	RGCGCY	2 cut(s)	14, 470
BstHHI	GCGC	4 cut(s)	13, 190, 192, 469
BstKTI	GATC	2 cut(s)	179, 546
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	176, 543
BstMCI	CGRYCG	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	230, 590, 605, 661
BstUI	CGCG	5 cut(s)	171, 188, 190, 287, 302
BstV1I	GCAGC	5 cut(s)	15, 154, 163, 396, 472
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	284, 346, 613, 625
BtgI	CCRYGG	4 cut(s)	160, 285, 300, 332
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	5 cut(s)	190, 354, 407, 458, 465
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	4 cut(s)	13, 190, 192, 469
Cfr10I	RCCGGY	2 cut(s)	13, 463
Cfr13I	GGNCC	5 cut(s)	425, 503, 594, 612, 624
Cfr42I	CCGCGG	2 cut(s)	288, 303
CseI	GACGC	1 cut(s)	160
CviAII	CATG	3 cut(s)	413, 511, 586
DdeI	CTNAG	5 cut(s)	318, 341, 485, 555, 720
DinI	GGCGCC	1 cut(s)	468
DpnI	GATC	2 cut(s)	178, 545
DpnII	GATC	2 cut(s)	176, 543
Eam1104I	CTCTTC	2 cut(s)	524, 564
EarI	CTCTTC	2 cut(s)	524, 564
EciI	GGCGGA	2 cut(s)	100, 323
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	425, 503, 594
Eco57I	CTGAAG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	3 cut(s)	416, 514, 589
FaiI	YATR	5 cut(s)	414, 512, 578, 587, 670
FatI	CATG	3 cut(s)	412, 510, 585
FauI	CCCGC	3 cut(s)	48, 188, 610
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	120
GlaI	GCGC	4 cut(s)	12, 189, 191, 468
HaeII	RGCGCY	2 cut(s)	14, 470
HaeIII	GGCC	4 cut(s)	284, 346, 613, 625
HapII	CCGG	6 cut(s)	14, 419, 464, 591, 607, 662
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	4 cut(s)	13, 190, 192, 469
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	416, 514, 589
Hin6I	GCGC	4 cut(s)	11, 188, 190, 467
HinP1I	GCGC	4 cut(s)	11, 188, 190, 467
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	134, 337, 710
HpaII	CCGG	6 cut(s)	14, 419, 464, 591, 607, 662
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188III	TCNNGA	5 cut(s)	52, 541, 586, 597, 637
Hpy8I	GTNNAC	1 cut(s)	684
Hpy99I	CGWCG	6 cut(s)	134, 176, 272, 275, 278, 364
HpyAV	CCTTC	3 cut(s)	370, 494, 517
HpyCH4III	ACNGT	2 cut(s)	126, 278
HpyCH4V	TGCA	3 cut(s)	31, 398, 412
HpyF3I	CTNAG	5 cut(s)	318, 341, 485, 555, 720
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	416, 514, 589
HspAI	GCGC	4 cut(s)	11, 188, 190, 467
KasI	GGCGCC	1 cut(s)	466
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
KspI	CCGCGG	2 cut(s)	288, 303
Kzo9I	GATC	2 cut(s)	176, 543
LmnI	GCTCC	2 cut(s)	63, 221
Lsp1109I	GCAGC	5 cut(s)	15, 154, 163, 396, 472
LweI	GCATC	1 cut(s)	682
MalI	GATC	2 cut(s)	178, 545
MboI	GATC	2 cut(s)	176, 543
MboII	GAAGA	4 cut(s)	529, 532, 541, 581
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	120, 358
MluCI	AATT	3 cut(s)	241, 564, 652
Mly113I	GGCGCC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	153, 154
MroNI	GCCGGC	1 cut(s)	463
MspA1I	CMGCKG	4 cut(s)	28, 287, 302, 689
MspI	CCGG	6 cut(s)	14, 419, 464, 591, 607, 662
MspR9I	CCNGG	4 cut(s)	232, 592, 607, 663
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	5 cut(s)	171, 188, 190, 287, 302
NaeI	GCCGGC	1 cut(s)	465
NarI	GGCGCC	1 cut(s)	467
NciI	CCSGG	3 cut(s)	592, 607, 663
NdeII	GATC	2 cut(s)	176, 543
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	416, 514, 589
NlaIV	GGNNCC	4 cut(s)	178, 426, 468, 595
NmeAIII	GCCGAG	2 cut(s)	139, 372
NspV	TTCGAA	1 cut(s)	374
PagI	TCATGA	1 cut(s)	585
PauI	GCGCGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	134, 337, 710
PflFI	GACNNNGTC	1 cut(s)	592
PluTI	GGCGCC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	178, 426, 468, 595
PspPI	GGNCC	5 cut(s)	425, 503, 594, 612, 624
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	592
PteI	GCGCGC	1 cut(s)	188
SacII	CCGCGG	2 cut(s)	288, 303
Sau3AI	GATC	2 cut(s)	176, 543
Sau96I	GGNCC	5 cut(s)	425, 503, 594, 612, 624
ScrFI	CCNGG	4 cut(s)	232, 592, 607, 663
SduI	GDGCHC	2 cut(s)	120, 358
SetI	ASST	6 cut(s)	228, 236, 324, 411, 505, 648
SfaNI	GCATC	1 cut(s)	682
SfoI	GGCGCC	1 cut(s)	468
Sfr303I	CCGCGG	2 cut(s)	288, 303
SfuI	TTCGAA	1 cut(s)	374
SgrAI	CRCCGGYG	1 cut(s)	13
SgrBI	CCGCGG	2 cut(s)	288, 303
SinI	GGWCC	3 cut(s)	425, 503, 594
Sse9I	AATT	3 cut(s)	241, 564, 652
SspDI	GGCGCC	1 cut(s)	466
StyD4I	CCNGG	4 cut(s)	230, 590, 605, 661
TaaI	ACNGT	2 cut(s)	126, 278
TaqI	TCGA	3 cut(s)	374, 476, 648
TasI	AATT	3 cut(s)	241, 564, 652
TfiI	GAWTC	3 cut(s)	134, 337, 710
TseI	GCWGC	5 cut(s)	28, 142, 151, 409, 460
TspDTI	ATGAA	2 cut(s)	571, 576
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	425, 503, 594
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.