AT4G19060

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009951
Physical Location & Seq
Reverse (-)
10444916 .. 10446300
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19060.1

Sequence Viewer

Length: 1152 bp
ATGGATATTGCTAAGAAGTTCATATCTGAAATTGATGACAAGCTCGAGTCTAAATCAGAATTTGATAAAGAGCTCGAGAAAATCAAGTCTTCCTTCAATGAAGAATATGAGAAATGGTCGTCTGGAAAACAGAGGGGATCTTCCTCTAAGCATGGAAACCAGTCCACACATGGTGATTCATCACCAACTCGTAACAGCAGCGGCAGCAGTAAAAAAGGGCGGCCTAAGGCGAACCGTGTGGAGACAAGCTCTGAGCTTCCGGATCACCTCATTCGTGGTTTCATTAACGAGAAACTGTTCTTGAAGAACTTCTTGCTGAAGCAAAAGGAATCCGAAGAGTTCAAGACTCTAGCAATTGTGGGGAAATACGGAGTTGGGAAAACGACATTGTGTCAGGCTGTGTTCAACGACGAAGATGTTAAGCAAGTTTATTTCCCGAGGATATGGGTTTCTATGTACAGCAAAGAAACAAAAGAAGACGAAGATCCCAAGATAGATGTTGTGAAGAGGATCTTGAGATCCCTTGGAGTTGAAGATGAGATGTTTAAACACATCAAAACAGAAGCAGAAGAAGAGAAGAGTATCAAAGATGAAGCTGGGGAAAGAGAGGAAGAGACGGTCAAAGAAAAGGAGCTTGCTCGATTATTGTATGCTCTTCACTTGAATCTGATTGGGAAGAAGTATCTGATAGTGTTGGATGATGTTTGGGAAGACAACGAGTGGGATCAAAGGCTCGATGATGAGAAGAAGCAACAGGAAAAATCACATCTTTCTTGTGGGTTTCCTAAAGGGTTTGGTGGGAAAGTGATTATGACTAGCAGAGACGAGAGATTGGCGAAGGCGATAGTCGGAGAAGAAGAGAATCTGCAGCGTTTGTTTCCAAGATCCGATGCAGAGAGCTTGTGGGAGATTTACATTGATGCAGTACCCACCAAGGTGGACGATGCAGCAGCCACGAATTTGGGCGATGCAGTAGCCACAAATGCGGGCGATGCAGTAGCCCCGAAAGTGAATCCGAGGTATCCGGGAAGATACAAACAAGAGCTTATGGATAAGTCTTGTGGTATTCCTTTGGCTGCTCGAATGCTGGCGAAGATTGAGCCTGTGAAAGTGGATGAAATTGGAAACATAGATAGGAAGCAGAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

383

Amino Acids

43.57

Weight (kDa)

5.59

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 102 - 290 1.1e-18 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 3 cut(s) 201, 220, 986
AclWI GGATC 7 cut(s) 145, 270, 479, 513, 518, 732, 879
AcsI RAATTY 2 cut(s) 59, 958
AcuI CTGAAG 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 458, 927
AgsI TTSAA 6 cut(s) 97, 304, 343, 406, 533, 664
AhdI GACNNNNNGTC 1 cut(s) 390
AleI CACNNNNGTG 1 cut(s) 935
AluBI AGCT 9 cut(s) 43, 73, 249, 256, 596, 634, 900, 1045, 1146
AluI AGCT 9 cut(s) 43, 73, 249, 256, 596, 634, 900, 1045, 1146
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 236, 608, 816
AlwI GGATC 7 cut(s) 145, 270, 479, 513, 518, 732, 879
Ama87I CYCGRG 3 cut(s) 44, 74, 436
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 6 cut(s) 198, 204, 868, 947, 950, 1076
ApoI RAATTY 2 cut(s) 59, 958
Asp700I GAANNNNTTC 2 cut(s) 296, 308
AsuC2I CCSGG 1 cut(s) 1026
AsuHPI GGTGA 3 cut(s) 174, 185, 257
AvaI CYCGRG 3 cut(s) 44, 74, 436
AxyI CCTNAGG 1 cut(s) 225
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 3 cut(s) 81, 483, 717
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 6 cut(s) 210, 216, 880, 959, 962, 1063
BciVI GTATCC 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 1026
BcoDI GTCTC 3 cut(s) 236, 608, 816
BfaI CTAG 2 cut(s) 350, 816
BfmI CTRYAG 1 cut(s) 866
BfuI GTATCC 1 cut(s) 1032
BisI GCNGC 8 cut(s) 199, 202, 205, 221, 869, 948, 951, 1077
BlsI GCNGC 8 cut(s) 200, 203, 206, 222, 870, 949, 952, 1078
Bme1390I CCNGG 1 cut(s) 1026
BmeRI GACNNNNNGTC 1 cut(s) 390
BmeT110I CYCGRG 3 cut(s) 44, 74, 436
BmrFI CCNGG 1 cut(s) 1026
BmsI GCATC 5 cut(s) 880, 910, 934, 958, 982
BpiI GAAGAC 3 cut(s) 81, 483, 717
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 1026
BsaJI CCNNGG 4 cut(s) 437, 523, 933, 1016
BsaWI WCCGGW 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 437, 523, 933, 1016
BseGI GGATG 2 cut(s) 703, 1120
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 6 cut(s) 210, 216, 880, 959, 962, 1063
BseYI CCCAGC 1 cut(s) 596
BshFI GGCC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 3 cut(s) 44, 74, 436
BsiSI CCGG 2 cut(s) 260, 1025
BsmAI GTCTC 3 cut(s) 236, 608, 816
BsmBI CGTCTC 2 cut(s) 608, 816
BsmI GAATGC 1 cut(s) 1089
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 3 cut(s) 44, 74, 436
Bsp1286I GDGCHC 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
BspACI CCGC 3 cut(s) 201, 220, 986
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 7 cut(s) 145, 270, 479, 513, 518, 732, 879
BspQI GCTCTTC 1 cut(s) 660
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 437, 523, 933, 1016
BssMI GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
BssT1I CCWWGG 2 cut(s) 523, 933
Bst4CI ACNGT 3 cut(s) 236, 297, 619
Bst6I CTCTTC 7 cut(s) 330, 500, 567, 572, 606, 660, 852
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 636, 988, 1089
BstDEI CTNAG 4 cut(s) 12, 147, 225, 252
BstF5I GGATG 2 cut(s) 703, 1120
BstKTI GATC 7 cut(s) 140, 265, 487, 513, 521, 727, 887
BstMAI GTCTC 3 cut(s) 236, 608, 816
BstMBI GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
BstMWI GCNNNNNNNGC 3 cut(s) 204, 983, 992
BstSCI CCNGG 1 cut(s) 1024
BstSFI CTRYAG 1 cut(s) 866
BstV1I GCAGC 6 cut(s) 210, 216, 880, 959, 962, 1063
BstV2I GAAGAC 3 cut(s) 81, 483, 717
BstX2I RGATCY 5 cut(s) 137, 484, 510, 518, 884
BstXI CCANNNNNNTGG 2 cut(s) 937, 961
BstYI RGATCY 5 cut(s) 137, 484, 510, 518, 884
Bsu36I CCTNAGG 1 cut(s) 225
BsuI GTATCC 1 cut(s) 1032
BsuRI GGCC 1 cut(s) 223
BtgZI GCGATG 2 cut(s) 981, 1005
BtsCI GGATG 2 cut(s) 703, 1120
Cac8I GCNNGC 3 cut(s) 636, 988, 1089
Csp6I GTAC 2 cut(s) 457, 926
CviAII CATG 2 cut(s) 152, 170
CviQI GTAC 2 cut(s) 457, 926
DdeI CTNAG 4 cut(s) 12, 147, 225, 252
DpnI GATC 7 cut(s) 139, 264, 486, 512, 520, 726, 886
DpnII GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
DraI TTTAAA 1 cut(s) 547
DraIII CACNNNGTG 1 cut(s) 173
DriI GACNNNNNGTC 1 cut(s) 390
Eam1104I CTCTTC 7 cut(s) 330, 500, 567, 572, 606, 660, 852
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 7 cut(s) 330, 500, 567, 572, 606, 660, 852
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 523, 933
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 225
Eco88I CYCGRG 3 cut(s) 44, 74, 436
EcoICRI GAGCTC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 523, 933
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 523, 933
Esp3I CGTCTC 2 cut(s) 608, 816
FaeI CATG 2 cut(s) 155, 173
FalI AAGNNNNNCTT 7 cut(s) 77, 109, 296, 328, 497, 529, 1130
FatI CATG 2 cut(s) 151, 169
FauI CCCGC 1 cut(s) 979
Fnu4HI GCNGC 8 cut(s) 199, 202, 205, 221, 869, 948, 951, 1077
FokI GGATG 2 cut(s) 710, 1127
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 8 cut(s) 199, 202, 205, 221, 869, 948, 951, 1077
FspBI CTAG 2 cut(s) 350, 816
GluI GCNGC 8 cut(s) 199, 202, 205, 221, 869, 948, 951, 1077
GsaI CCCAGC 1 cut(s) 600
HaeIII GGCC 1 cut(s) 223
HapII CCGG 2 cut(s) 260, 1025
Hin1II CATG 2 cut(s) 155, 173
HinfI GANTC 7 cut(s) 47, 176, 329, 346, 664, 862, 1012
HpaII CCGG 2 cut(s) 260, 1025
HphI GGTGA 3 cut(s) 174, 185, 257
Hpy166II GTNNAC 2 cut(s) 165, 940
Hpy188I TCNGA 9 cut(s) 28, 58, 253, 334, 669, 687, 851, 889, 1017
Hpy188III TCNNGA 7 cut(s) 76, 123, 260, 301, 343, 436, 514
Hpy8I GTNNAC 2 cut(s) 165, 940
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 103, 832
HpyCH4III ACNGT 3 cut(s) 236, 297, 619
HpyCH4V TGCA 6 cut(s) 868, 893, 923, 947, 971, 995
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 983, 992
HpyF3I CTNAG 4 cut(s) 12, 147, 225, 252
Hsp92II CATG 2 cut(s) 155, 173
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 9 cut(s) 108, 173, 273, 380, 582, 740, 1038, 1073, 1116
Lsp1109I GCAGC 6 cut(s) 210, 216, 880, 959, 962, 1063
LweI GCATC 5 cut(s) 880, 910, 934, 958, 982
MaeI CTAG 2 cut(s) 350, 816
MaeIII GTNAC 1 cut(s) 191
MalI GATC 7 cut(s) 139, 264, 486, 512, 520, 726, 886
MboI GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 5 cut(s) 137, 484, 510, 518, 884
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 5 cut(s) 30, 59, 354, 958, 1119
MlyI GAGTC 2 cut(s) 56, 340
MmeI TCCRAC 2 cut(s) 675, 829
MnlI CCTC 7 cut(s) 126, 154, 278, 432, 501, 601, 1011
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 2 cut(s) 296, 308
MseI TTAA 3 cut(s) 285, 420, 546
MslI CAYNNNNRTG 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 2 cut(s) 260, 1025
MspR9I CCNGG 1 cut(s) 1026
MssI GTTTAAAC 1 cut(s) 547
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 1089
MwoI GCNNNNNNNGC 3 cut(s) 204, 983, 992
NciI CCSGG 1 cut(s) 1026
NdeII GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
NlaIII CATG 2 cut(s) 155, 173
OliI CACNNNNGTG 1 cut(s) 935
PaeR7I CTCGAG 2 cut(s) 44, 74
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 1089
PdmI GAANNNNTTC 2 cut(s) 296, 308
PfeI GAWTC 5 cut(s) 176, 329, 664, 862, 1012
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 8 cut(s) 200, 203, 206, 222, 870, 949, 952, 1078
PleI GAGTC 2 cut(s) 55, 340
PmeI GTTTAAAC 1 cut(s) 547
PpsI GAGTC 2 cut(s) 55, 340
Psp124BI GAGCTC 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 596
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 5 cut(s) 137, 484, 510, 518, 884
RsaI GTAC 2 cut(s) 458, 927
RsaNI GTAC 2 cut(s) 457, 926
RseI CAYNNNNRTG 1 cut(s) 935
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 285, 420, 546
SatI GCNGC 8 cut(s) 199, 202, 205, 221, 869, 948, 951, 1077
Sau3AI GATC 7 cut(s) 137, 262, 484, 510, 518, 724, 884
SchI GAGTC 2 cut(s) 56, 340
ScrFI CCNGG 1 cut(s) 1026
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 5 cut(s) 880, 910, 934, 958, 982
SfcI CTRYAG 1 cut(s) 866
Sfr274I CTCGAG 2 cut(s) 44, 74
SlaI CTCGAG 2 cut(s) 44, 74
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 3 cut(s) 44, 74, 514
SmoI CTYRAG 3 cut(s) 44, 74, 514
Sse9I AATT 5 cut(s) 30, 59, 354, 958, 1119
SsiI CCGC 3 cut(s) 201, 220, 986
SspMI CTAG 2 cut(s) 350, 816
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 1024
StyI CCWWGG 2 cut(s) 523, 933
TaaI ACNGT 3 cut(s) 236, 297, 619
TaqI TCGA 5 cut(s) 45, 75, 640, 735, 1081
TasI AATT 5 cut(s) 30, 59, 354, 958, 1119
TatI WGTACW 1 cut(s) 456
TauI GCSGC 2 cut(s) 204, 223
TfiI GAWTC 5 cut(s) 176, 329, 664, 862, 1012
Tru1I TTAA 3 cut(s) 285, 420, 546
Tru9I TTAA 3 cut(s) 285, 420, 546
TseI GCWGC 6 cut(s) 198, 204, 868, 947, 950, 1076
TspDTI ATGAA 6 cut(s) 10, 114, 168, 271, 606, 1131
TspGWI ACGGA 1 cut(s) 384
XapI RAATTY 2 cut(s) 59, 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XhoI CTCGAG 2 cut(s) 44, 74
XmnI GAANNNNTTC 2 cut(s) 296, 308
XspI CTAG 2 cut(s) 350, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.