RLG00000023564

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009951
Physical Location & Seq
Reverse (-)
25251274 .. 25253399
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023564

Sequence Viewer

Length: 330 bp
ATGTACTTTATGGAAAAGAGTGATGTTGCAGAGACTGGTCCAATGGCTCAAGAAATGGAACTGCACTTGAAAGACAAGTTCCTGGACGGCCTTGATATGAAGGACAAAAGCATCTCCAAGATTCCAAGGTACAACCAATTTCAACAGATAAAGAGATTGCTAGAAGACATGTTCAGCTCATCCACGCCTGCAATAGCCGAGTTTCCGAGTGCACCCAATTTCAGGGACAAGCTTTACAAGCTCAACAATCTTTTGACCGACTGCAAGATGCTATCAAGAAAACATGTCACAGTATTGTTGGGTTATCATCTGCAAGTTTCCGATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

6.9

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 5, 131
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 2 cut(s) 168, 283
AgsI TTSAA 2 cut(s) 70, 143
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 3 cut(s) 177, 232, 241
AluI AGCT 3 cut(s) 177, 232, 241
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 120, 258
BpiI GAAGAC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 47
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 322
BspANI GGCC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 172, 287
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 4, 130
CviAII CATG 2 cut(s) 169, 284
CviJI RGCY 6 cut(s) 47, 90, 177, 197, 232, 241
CviKI_1 RGCY 6 cut(s) 47, 90, 177, 197, 232, 241
CviQI GTAC 2 cut(s) 4, 130
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 2 cut(s) 172, 287
FaiI YATR 4 cut(s) 11, 98, 170, 285
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 168, 283
FokI GGATG 1 cut(s) 166
FspBI CTAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 2 cut(s) 172, 287
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 207, 322
Hpy188III TCNNGA 2 cut(s) 50, 276
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 29, 64, 191, 212, 264, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92II CATG 2 cut(s) 172, 287
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 5 cut(s) 21, 68, 95, 201, 208
LweI GCATC 2 cut(s) 120, 258
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 2 cut(s) 137, 217
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 172, 287
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 2 cut(s) 172, 287
PciI ACATGT 2 cut(s) 168, 283
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 81
PscI ACATGT 2 cut(s) 168, 283
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 5, 131
RsaNI GTAC 2 cut(s) 4, 130
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 131, 179, 234, 243
SfaNI GCATC 2 cut(s) 120, 258
SinI GGWCC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 2 cut(s) 137, 217
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 292
TaqII GACCGA 1 cut(s) 272
TasI AATT 2 cut(s) 137, 217
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 121
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 113
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 2 cut(s) 172, 287
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.