Prupe.7G078500_v2.0.a1

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009951
Physical Location & Seq
Forward (+)
11445271 .. 11447659
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G078500.1

Sequence Viewer

Length: 1149 bp
ATGGCTCAAGAAATTGAACATTATCTAATGGAAAAATTCAAGAAAGTTCTTGATGGGAAAGACAAAAGTATCTCCAAAATTCCCAGGTACAACCAATTTCAAGAAATAAAGTCTTTGCTTGTAGACATTTTCAGCTCATTCTCCCCTGTAGATTCATCCATCAGGGACAAGCTTTACTACCTCAACAATGTTGTCACTGAGTGCCAGATGCTAACAAGAAAACACGGTTTCAATTCTCCTGAGGAGCTACTCACCATTAACAGAATCAGAAGGGAGTTAAATAAGATCAAGAGGGAACTCAAGGCTACGAAAGATAAACTACAACCTAACAATGGTGTTTCAAGCTCACAGGACACGGAGACAAGCTCACGGGACACAGGGATTTCGAGGTGGACTACTCATGTAGTAGATGATTCCAAGGTTTATGGATTTGATGATAATGTGGTGTCAATGGAAAAGTTGCTTCTTGAAAAAGAAAGTCATGATCGGTTCAAGGCAGTAGGCATTGTTGGTAGGGAAGGGATAGGCAAAACAACACTTTGCCAATTGATATTCAACAAACCAGAGGTGAAAAACAACTTCCTTCCAAGGATCTGGGTGTGTATGGCCAGACACCCGGATGACAATGAGGATCCAAAACTAGCAATTGTGAAAAGAATGTTGATGCAGCTTGGAGTTGAAAAGAAAATGGTCAGTTTCATTTTTAATGAGAAGCGTGGCCTCGAAGGACTGCTATGTGCTCTTCACCTGCAATTGGTGGGGAAGAGGTATCTGATTGTGCTTGATGATGCTAGGGAGACCGACACATGGTACGGAAAGTTGGATTCTTGTCTGACTAGTGATAAGAAATGGGACGATGGGTTTGCATTCGGATTGCCAAAAGGGAATGGGGGTAGAGTCATAGTCACAAGTAGGAATGAAGAACTAGCAAAGATGATGGTTGGAGAAGAAAATATACATCGCCTTTTGCCGCTTTCAGACCCTGAAAGCTGCTGGAAAATATTCGAAGACGCAGTTGAGAATGATCCGATTCTATTCTATCCTTCAGACTTGGAAGATCTGAAGTTGGAAATCAATCAAAAATGTGGGGGCCTTCCATTAGCAGCAAAAATGATGGGACAGGCAATGCATGAACAAGTTCCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

383

Amino Acids

43.76

Weight (kDa)

6.73

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 756
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 971
AclWI GGATC 4 cut(s) 599, 626, 639, 1019
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 2 cut(s) 35, 78
AcuI CTGAAG 2 cut(s) 1029, 1082
AdeI CACNNNGTG 1 cut(s) 201
AfaI GTAC 2 cut(s) 89, 812
AfiI CCNNNNNNNGG 3 cut(s) 332, 754, 807
AgsI TTSAA 9 cut(s) 17, 40, 101, 232, 342, 470, 493, 556, 680
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 7 cut(s) 135, 172, 247, 345, 366, 670, 990
AluI AGCT 7 cut(s) 135, 172, 247, 345, 366, 670, 990
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 353, 791
AlwI GGATC 4 cut(s) 599, 626, 639, 1019
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 3 cut(s) 606, 718, 1090
ApeKI GCWGC 3 cut(s) 667, 990, 1103
ApoI RAATTY 2 cut(s) 35, 78
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp700I GAANNNNTTC 2 cut(s) 1001, 1137
AspS9I GGNCC 1 cut(s) 1090
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 3 cut(s) 244, 580, 737
AsuII TTCGAA 1 cut(s) 1005
AxyI CCTNAGG 1 cut(s) 240
BaeI ACNNNNGTAYC 2 cut(s) 52, 85
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 1 cut(s) 631
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BbsI GAAGAC 1 cut(s) 1014
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 3 cut(s) 679, 977, 1115
BccI CCATC 5 cut(s) 47, 167, 851, 931, 1108
BcgI CGANNNNNNTGC 2 cut(s) 845, 879
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 353, 791
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 4 cut(s) 641, 792, 837, 926
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 756
BglII AGATCT 1 cut(s) 1057
BisI GCNGC 4 cut(s) 668, 971, 991, 1104
BlsI GCNGC 4 cut(s) 669, 972, 992, 1105
Bme1390I CCNGG 2 cut(s) 85, 617
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 2 cut(s) 633, 1091
BmrFI CCNGG 2 cut(s) 85, 617
BmsI GCATC 3 cut(s) 198, 654, 778
BpiI GAAGAC 1 cut(s) 1014
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu14I TTCGAA 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 83, 417, 587
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 754, 807
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 1131
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 83, 417, 587
BseGI GGATG 2 cut(s) 155, 625
BseLI CCNNNNNNNGG 3 cut(s) 332, 754, 807
BseMI GCAATG 1 cut(s) 1131
BseMII CTCAG 2 cut(s) 189, 231
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 679, 977, 1115
BshFI GGCC 3 cut(s) 608, 720, 1092
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 4 cut(s) 179, 386, 866, 1131
BslI CCNNNNNNNGG 3 cut(s) 332, 754, 807
BsmAI GTCTC 2 cut(s) 353, 791
BsmFI GGGAC 4 cut(s) 179, 386, 866, 1131
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 3 cut(s) 608, 720, 1092
Bso31I GGTCTC 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 1005
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
BspACI CCGC 1 cut(s) 971
BspANI GGCC 3 cut(s) 608, 720, 1092
BspCNI CTCAG 2 cut(s) 190, 232
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 633, 1091
BspMI ACCTGC 1 cut(s) 756
BspPI GGATC 4 cut(s) 599, 626, 639, 1019
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 1005
BspTNI GGTCTC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 1131
BssECI CCNNGG 3 cut(s) 83, 417, 587
BssMI GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
BssT1I CCWWGG 2 cut(s) 417, 587
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 747, 758
BstBI TTCGAA 1 cut(s) 1005
BstDEI CTNAG 2 cut(s) 198, 240
BstF5I GGATG 2 cut(s) 155, 625
BstKTI GATC 6 cut(s) 288, 487, 594, 634, 1027, 1060
BstMAI GTCTC 2 cut(s) 353, 791
BstMBI GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 615
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 679, 977, 1115
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 3 cut(s) 591, 631, 1057
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 3 cut(s) 591, 631, 1057
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 3 cut(s) 608, 720, 1092
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 2 cut(s) 155, 625
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 756
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 1090
CseI GACGC 1 cut(s) 1019
Csp6I GTAC 2 cut(s) 88, 811
CviAII CATG 4 cut(s) 401, 482, 807, 1130
CviQI GTAC 2 cut(s) 88, 811
DdeI CTNAG 2 cut(s) 198, 240
DpnI GATC 6 cut(s) 287, 486, 593, 633, 1026, 1059
DpnII GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
DraIII CACNNNGTG 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 747, 758
EarI CTCTTC 2 cut(s) 747, 758
Eco130I CCWWGG 2 cut(s) 417, 587
Eco31I GGTCTC 1 cut(s) 791
Eco57I CTGAAG 2 cut(s) 1029, 1082
Eco81I CCTNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 1090
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 417, 587
EcoT22I ATGCAT 1 cut(s) 1131
ErhI CCWWGG 2 cut(s) 417, 587
FaeI CATG 4 cut(s) 404, 485, 810, 1133
FaiI YATR 9 cut(s) 402, 426, 483, 605, 736, 808, 902, 956, 1131
FaqI GGGAC 4 cut(s) 179, 386, 866, 1131
FatI CATG 4 cut(s) 400, 481, 806, 1129
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 668, 971, 991, 1104
FokI GGATG 2 cut(s) 142, 632
Fsp4HI GCNGC 4 cut(s) 668, 971, 991, 1104
FspBI CTAG 4 cut(s) 641, 792, 837, 926
GluI GCNGC 4 cut(s) 668, 971, 991, 1104
HaeIII GGCC 3 cut(s) 608, 720, 1092
HapII CCGG 1 cut(s) 617
HgaI GACGC 1 cut(s) 1019
Hin1II CATG 4 cut(s) 404, 485, 810, 1133
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 6 cut(s) 152, 264, 413, 824, 897, 1030
HpaII CCGG 1 cut(s) 617
HphI GGTGA 3 cut(s) 244, 580, 737
Hpy166II GTNNAC 2 cut(s) 124, 393
Hpy188I TCNGA 9 cut(s) 269, 774, 834, 872, 979, 1029, 1048, 1062, 1143
Hpy188III TCNNGA 8 cut(s) 8, 40, 50, 101, 239, 289, 467, 482
Hpy8I GTNNAC 2 cut(s) 124, 393
HpyAV CCTTC 6 cut(s) 264, 512, 593, 719, 1053, 1103
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 667, 751, 866, 1129
HpyF3I CTNAG 2 cut(s) 198, 240
Hsp92II CATG 4 cut(s) 404, 485, 810, 1133
Kzo9I GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 3 cut(s) 679, 977, 1115
LweI GCATC 3 cut(s) 198, 654, 778
MaeI CTAG 4 cut(s) 641, 792, 837, 926
MaeIII GTNAC 2 cut(s) 193, 904
MalI GATC 6 cut(s) 287, 486, 593, 633, 1026, 1059
MboI GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
MboII GAAGA 6 cut(s) 734, 775, 932, 959, 1019, 1067
MfeI CAATTG 3 cut(s) 545, 645, 752
MflI RGATCY 3 cut(s) 591, 631, 1057
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 8 cut(s) 12, 35, 78, 95, 232, 545, 645, 752
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 1 cut(s) 906
MmeI TCCRAC 3 cut(s) 801, 922, 1047
MnlI CCTC 8 cut(s) 191, 235, 285, 381, 559, 622, 731, 759
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 1131
MroXI GAANNNNTTC 2 cut(s) 1001, 1137
MscI TGGCCA 1 cut(s) 608
MseI TTAA 3 cut(s) 258, 278, 705
MslI CAYNNNNRTG 1 cut(s) 618
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 85, 617
MunI CAATTG 3 cut(s) 545, 645, 752
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 617
NdeII GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
NlaIII CATG 4 cut(s) 404, 485, 810, 1133
NlaIV GGNNCC 2 cut(s) 633, 1091
NmuCI GTSAC 2 cut(s) 193, 904
NsiI ATGCAT 1 cut(s) 1131
NspV TTCGAA 1 cut(s) 1005
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 2 cut(s) 1001, 1137
PfeI GAWTC 5 cut(s) 152, 264, 413, 824, 1030
PkrI GCNGC 4 cut(s) 669, 972, 992, 1105
PleI GAGTC 1 cut(s) 905
PpsI GAGTC 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 633, 1091
PspPI GGNCC 1 cut(s) 1090
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 3 cut(s) 591, 631, 1057
RsaI GTAC 2 cut(s) 89, 812
RsaNI GTAC 2 cut(s) 88, 811
RseI CAYNNNNRTG 1 cut(s) 618
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 3 cut(s) 258, 278, 705
SatI GCNGC 4 cut(s) 668, 971, 991, 1104
Sau3AI GATC 6 cut(s) 285, 484, 591, 631, 1024, 1057
Sau96I GGNCC 1 cut(s) 1090
SchI GAGTC 1 cut(s) 906
ScrFI CCNGG 2 cut(s) 85, 617
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 3 cut(s) 198, 654, 778
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 1005
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 6, 299
SmoI CTYRAG 2 cut(s) 6, 299
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 8 cut(s) 12, 35, 78, 95, 232, 545, 645, 752
SsiI CCGC 1 cut(s) 971
SspI AATATT 1 cut(s) 1002
SspMI CTAG 4 cut(s) 641, 792, 837, 926
StyD4I CCNGG 2 cut(s) 83, 615
StyI CCWWGG 2 cut(s) 417, 587
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 386, 723, 1005
TaqII GACCGA 1 cut(s) 815
TasI AATT 8 cut(s) 12, 35, 78, 95, 232, 545, 645, 752
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 5 cut(s) 152, 264, 413, 824, 1030
Tru1I TTAA 3 cut(s) 258, 278, 705
Tru9I TTAA 3 cut(s) 258, 278, 705
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 193, 904
TseI GCWGC 3 cut(s) 667, 990, 1103
Tsp45I GTSAC 2 cut(s) 193, 904
TspDTI ATGAA 4 cut(s) 144, 688, 933, 1146
TspGWI ACGGA 2 cut(s) 371, 828
TspRI CASTG 1 cut(s) 202
XapI RAATTY 2 cut(s) 35, 78
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 2 cut(s) 1001, 1137
XspI CTAG 4 cut(s) 641, 792, 837, 926
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.