Rorug03G0175800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009951
Physical Location & Seq
Forward (+)
14896972 .. 14897753
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0175800.1

Sequence Viewer

Length: 741 bp
ATGGGTGTGCTGAGGAGTTGGAGAAGGTGTTTGATAAAAAGGTTTGGTGCATTGGACCAGTTTCCTTATGCTACAAGAGCAATTCAGAAAAGTTTTCTAGAGGTAACAAATCCTCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGCAACCAAGTCCCATCACAACTGATAGAGCTTGGACTAGGCTTAGAAGCCTCAGGAAAACCCTTTATCTGGGTAATCAAAACATATGGGAAGTATGAAGAATTGGAGAAGTGGTTAATGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGGCCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAGTCCAGCAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATGTTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCTGAGCAATTCCTTAACGAAAAATTGATCATAGAGGTTTTAAAGATCGGTGTTCGGATTGGTGTGGAGATTCCTGTTAGATGGGGAGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAGGCAATACAAACACTGATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGGGGAAGAGCCATGGAACAAAGAGGTTCATCGCACTCAAGCATGTCTTCTTTGATTCAAGATGTTAGGCAATTACGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

246

Amino Acids

27.64

Weight (kDa)

9.32

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 99 - 158 2e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AclWI GGATC 1 cut(s) 302
AfaI GTAC 1 cut(s) 736
AfiI CCNNNNNNNGG 2 cut(s) 222, 362
AgsI TTSAA 2 cut(s) 148, 716
AjuI GAANNNNNNNTTGG 4 cut(s) 327, 359, 531, 563
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AlwI GGATC 1 cut(s) 302
AoxI GGCC 2 cut(s) 307, 437
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 571, 586, 620
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 205
BanII GRGCYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 696
BbvCI CCTCAGC 1 cut(s) 11
BccI CCATC 5 cut(s) 175, 522, 563, 592, 596
BclI TGATCA 3 cut(s) 315, 429, 474
BfaI CTAG 2 cut(s) 98, 191
BlpI GCTNAGC 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 450
BpuEI CTTGAG 3 cut(s) 334, 379, 679
BsaAI YACGTR 1 cut(s) 734
BsaJI CCNNGG 1 cut(s) 669
BsaXI ACNNNNNCTCC 8 cut(s) 13, 43, 251, 266, 281, 296, 543, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 362
Bse1I ACTGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 222, 362
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 219, 441
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 28, 290
BshFI GGCC 2 cut(s) 309, 439
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 222, 362
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 309, 439
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 5 cut(s) 294, 315, 429, 474, 492
Bsp1720I GCTNAGC 1 cut(s) 450
Bsp19I CCATGG 1 cut(s) 669
BspANI GGCC 2 cut(s) 309, 439
BspCNI CTCAG 2 cut(s) 218, 442
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 5 cut(s) 294, 315, 429, 474, 492
BssT1I CCWWGG 1 cut(s) 669
Bst6I CTCTTC 3 cut(s) 298, 534, 658
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 4 cut(s) 11, 196, 205, 450
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 5 cut(s) 297, 318, 432, 477, 495
BstMBI GATC 5 cut(s) 294, 315, 429, 474, 492
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 2 cut(s) 414, 703
BstSNI TACGTA 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 696
Bsu36I CCTNAGG 1 cut(s) 205
BsuRI GGCC 2 cut(s) 309, 439
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 593
Cac8I GCNNGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 735
CviAII CATG 5 cut(s) 411, 435, 670, 700, 738
CviJI RGCY 8 cut(s) 144, 184, 195, 203, 309, 329, 439, 668
CviKI_1 RGCY 8 cut(s) 144, 184, 195, 203, 309, 329, 439, 668
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 4 cut(s) 11, 196, 205, 450
DpnI GATC 5 cut(s) 296, 317, 431, 476, 494
DpnII GATC 5 cut(s) 294, 315, 429, 474, 492
DraI TTTAAA 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 298, 534, 658
EarI CTCTTC 3 cut(s) 298, 534, 658
Eco105I TACGTA 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 5 cut(s) 414, 438, 673, 703, 741
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 1 cut(s) 149
FatI CATG 5 cut(s) 410, 434, 669, 699, 737
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 3 cut(s) 315, 429, 474
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 331
FspBI CTAG 2 cut(s) 98, 191
HaeIII GGCC 2 cut(s) 309, 439
Hin1II CATG 5 cut(s) 414, 438, 673, 703, 741
HinfI GANTC 4 cut(s) 126, 148, 517, 712
HphI GGTGA 3 cut(s) 571, 586, 620
Hpy188I TCNGA 2 cut(s) 87, 504
Hpy188III TCNNGA 3 cut(s) 98, 207, 716
HpyAV CCTTC 5 cut(s) 18, 398, 574, 608, 649
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 3 cut(s) 50, 138, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 4 cut(s) 11, 196, 205, 450
HpySE526I ACGT 1 cut(s) 733
Hsp92II CATG 5 cut(s) 414, 438, 673, 703, 741
Ksp22I TGATCA 3 cut(s) 315, 429, 474
Kzo9I GATC 5 cut(s) 294, 315, 429, 474, 492
LguI GCTCTTC 1 cut(s) 658
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 71, 192, 208, 369, 402, 534
MaeI CTAG 2 cut(s) 98, 191
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 296, 317, 431, 476, 494
MboI GATC 5 cut(s) 294, 315, 429, 474, 492
MboII GAAGA 9 cut(s) 263, 315, 551, 574, 589, 623, 639, 675, 696
MfeI CAATTG 2 cut(s) 116, 360
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 8 cut(s) 81, 116, 254, 360, 455, 470, 645, 728
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 368, 529
MseI TTAA 4 cut(s) 269, 374, 462, 488
MunI CAATTG 2 cut(s) 116, 360
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 669
NdeI CATATG 1 cut(s) 238
NdeII GATC 5 cut(s) 294, 315, 429, 474, 492
NlaIII CATG 5 cut(s) 414, 438, 673, 703, 741
NlaIV GGNNCC 1 cut(s) 330
NspI RCATGY 2 cut(s) 414, 703
PceI AGGCCT 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 658
PfeI GAWTC 3 cut(s) 148, 517, 712
PflMI CCANNNNNTGG 1 cut(s) 362
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 734
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
SapI GCTCTTC 1 cut(s) 658
SaqAI TTAA 4 cut(s) 269, 374, 462, 488
Sau3AI GATC 5 cut(s) 294, 315, 429, 474, 492
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 331
SetI ASST 9 cut(s) 29, 44, 105, 186, 284, 486, 610, 685, 736
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 3 cut(s) 349, 394, 694
SmoI CTYRAG 3 cut(s) 349, 394, 694
SnaBI TACGTA 1 cut(s) 734
Sse9I AATT 8 cut(s) 81, 116, 254, 360, 455, 470, 645, 728
SseBI AGGCCT 1 cut(s) 309
SspMI CTAG 2 cut(s) 98, 191
StuI AGGCCT 1 cut(s) 309
StyI CCWWGG 1 cut(s) 669
TaiI ACGT 1 cut(s) 736
TasI AATT 8 cut(s) 81, 116, 254, 360, 455, 470, 645, 728
TfiI GAWTC 3 cut(s) 148, 517, 712
Tru1I TTAA 4 cut(s) 269, 374, 462, 488
Tru9I TTAA 4 cut(s) 269, 374, 462, 488
TscAI CASTG 1 cut(s) 600
TspDTI ATGAA 3 cut(s) 264, 552, 675
TspRI CASTG 1 cut(s) 600
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 2 cut(s) 414, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XspI CTAG 2 cut(s) 98, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.