AT5G45490

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009951
Physical Location & Seq
Forward (+)
18429047 .. 18432430
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45490.2

Sequence Viewer

Length: 1065 bp
ATGCCTTCAAAAAATCTACAACAGGCAGTCCTCACAAACGAATTCACAACCAACTTCATTACGACCTGTAAGGACTGGCTCGACGTAAATGGTCTTGCTAAAGGAAACTTGGAGAAGAAGAGAGATGATAATGAAGAAGAAGAGCGTCTGAAAACCGAGTCTAAACTTCCGGGCCATGACATCCACGGTTTCGATAACGAGATCAAGTCATTGCAACACTTCTTGTTGGATCAGAAGGTTAGGAGGGAGTTCAAGAGTCTTGTGATTGTCGGAGAATATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATGAAGCTGTGAAGAGTGTTTATGCTCCCAGGGTTTGGGTGTCTATGGAAAACAAAGAATCTAAGGAGGGACTTGATGGGAAGATATGTGTGTTGAAGAAGATCTTGAAGGGTCTTGGAGTTGAAGAGTTAATCCTCGAAACTATCAGTACTGATGCCAAACAAGAATTTAAGGACAATGAGGAAGTTGCAAGCAATCAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAATATCTGATTGTGTTTGATGATGTTCGGGAAAACGATAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAACCTTGTTGCTCAGAAACATGAGATCCATCGTCTTTGGCCGCTGTCTGATCATCAGAGTGTCTGGAAGATATATGATGCAGTGGTTAAAGATAAACAGAAAGAGTCACCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAATAAGTCTCGTGGTCTTCCTCTGGCTGCCAGACTGTTGGCTGAGCGTGATCCCGTCTTTGTTGACGATGAAGTTGGCCCTGTTGGTTCTACCCATGGACAAACCGACTCATCGAACCGCCAACCTGCAAACCAGGCCAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

354

Amino Acids

40.43

Weight (kDa)

5.58

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 65 - 216 7.7e-07 AAA ATPase domain
NB-ARC PF00931 68 - 291 3.1e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1051
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 2 cut(s) 815, 1036
AclWI GGATC 3 cut(s) 237, 793, 962
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 2 cut(s) 41, 485
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 7 cut(s) 9, 253, 316, 415, 427, 443, 592
AjnI CCWGG 2 cut(s) 347, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 6 cut(s) 326, 524, 562, 661, 913, 1059
AluI AGCT 6 cut(s) 326, 524, 562, 661, 913, 1059
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 2 cut(s) 536, 930
AlwI GGATC 3 cut(s) 237, 793, 962
AlwNI CAGNNNCTG 1 cut(s) 1062
AoxI GGCC 4 cut(s) 172, 812, 994, 1053
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 2 cut(s) 41, 485
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 172, 995
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 873
BanII GRGCYC 1 cut(s) 564
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 2 cut(s) 296, 926
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 931
BccI CCATC 3 cut(s) 389, 704, 810
BciT130I CCWGG 2 cut(s) 349, 1052
BclI TGATCA 1 cut(s) 823
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 536, 930
BfuAI ACCTGC 1 cut(s) 1051
BglII AGATCT 2 cut(s) 309, 420
BisI GCNGC 2 cut(s) 815, 945
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 2 cut(s) 816, 946
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 171, 349, 1052
BmgT120I GGNCC 2 cut(s) 172, 995
BmrFI CCNGG 3 cut(s) 171, 349, 1052
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 3 cut(s) 463, 655, 841
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 2 cut(s) 296, 926
BpmI CTGGAG 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 5 cut(s) 184, 347, 348, 884, 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 80, 653
Bse3DI GCAATG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 2 cut(s) 349, 1052
BseDI CCNNGG 5 cut(s) 184, 347, 348, 884, 1012
BseGI GGATG 2 cut(s) 180, 688
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 3 cut(s) 587, 800, 951
BseNI ACTGG 2 cut(s) 80, 653
BseXI GCAGC 1 cut(s) 931
BshFI GGCC 4 cut(s) 174, 814, 996, 1055
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 2 cut(s) 402, 665
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 536, 930
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 402, 665
BsnI GGCC 4 cut(s) 174, 814, 996, 1055
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
Bsp1720I GCTNAGC 1 cut(s) 960
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 2 cut(s) 815, 1036
BspANI GGCC 4 cut(s) 174, 814, 996, 1055
BspCNI CTCAG 3 cut(s) 588, 799, 952
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 3 cut(s) 237, 793, 962
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 2 cut(s) 80, 653
BssECI CCNNGG 5 cut(s) 184, 347, 348, 884, 1012
BssMI GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 884, 1012
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 349, 1052
Bst4CI ACNGT 2 cut(s) 188, 954
Bst6I CTCTTC 4 cut(s) 113, 135, 326, 438
BstC8I GCNNGC 2 cut(s) 511, 1057
BstDEI CTNAG 4 cut(s) 381, 596, 786, 960
BstDSI CCRYGG 2 cut(s) 184, 1012
BstF5I GGATG 2 cut(s) 180, 688
BstKTI GATC 7 cut(s) 204, 232, 312, 423, 801, 826, 970
BstMAI GTCTC 2 cut(s) 536, 930
BstMBI GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
BstMWI GCNNNNNNNGC 1 cut(s) 1052
BstNI CCWGG 2 cut(s) 349, 1052
BstSCI CCNGG 3 cut(s) 169, 347, 1050
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 2 cut(s) 296, 926
BstX2I RGATCY 3 cut(s) 309, 420, 798
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 3 cut(s) 309, 420, 798
BsuRI GGCC 4 cut(s) 174, 814, 996, 1055
BtgI CCRYGG 2 cut(s) 184, 1012
BtsCI GGATG 2 cut(s) 180, 688
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 2 cut(s) 511, 1057
CaiI CAGNNNCTG 1 cut(s) 1062
Cfr13I GGNCC 2 cut(s) 172, 995
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 468
CviAII CATG 3 cut(s) 176, 794, 1013
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 4 cut(s) 381, 596, 786, 960
DpnI GATC 7 cut(s) 203, 231, 311, 422, 800, 825, 969
DpnII GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 4 cut(s) 113, 135, 326, 438
EarI CTCTTC 4 cut(s) 113, 135, 326, 438
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 884, 1012
Eco24I GRGCYC 1 cut(s) 564
Eco53kI GAGCTC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 347, 1050
EcoT14I CCWWGG 2 cut(s) 884, 1012
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 2 cut(s) 884, 1012
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 3 cut(s) 179, 797, 1016
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 2 cut(s) 402, 665
FatI CATG 3 cut(s) 175, 793, 1012
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 2 cut(s) 815, 945
FokI GGATG 2 cut(s) 167, 695
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 2 cut(s) 815, 945
GluI GCNGC 2 cut(s) 815, 945
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 4 cut(s) 174, 814, 996, 1055
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 179, 797, 1016
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 9 cut(s) 158, 256, 377, 592, 714, 738, 763, 878, 1025
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 873
Hpy166II GTNNAC 1 cut(s) 982
Hpy188I TCNGA 9 cut(s) 150, 234, 272, 597, 615, 709, 789, 823, 831
Hpy188III TCNNGA 6 cut(s) 253, 424, 518, 635, 838, 1062
Hpy8I GTNNAC 1 cut(s) 982
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 15, 229, 421, 550
HpyCH4III ACNGT 2 cut(s) 188, 954
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 5 cut(s) 214, 509, 581, 854, 1046
HpyF10VI GCNNNNNNNGC 1 cut(s) 1052
HpyF3I CTNAG 4 cut(s) 381, 596, 786, 960
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 179, 797, 1016
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 3 cut(s) 349, 559, 1064
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 3 cut(s) 463, 655, 841
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 879
MalI GATC 7 cut(s) 203, 231, 311, 422, 800, 825, 969
MboI GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
MflI RGATCY 3 cut(s) 309, 420, 798
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 3 cut(s) 41, 485, 531
MlyI GAGTC 5 cut(s) 167, 265, 747, 887, 1019
MmeI TCCRAC 2 cut(s) 207, 250
MnlI CCTC 8 cut(s) 41, 237, 379, 464, 493, 591, 673, 948
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 3 cut(s) 449, 489, 861
MslI CAYNNNNRTG 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 171, 349, 1052
MvaI CCWGG 2 cut(s) 349, 1052
MwoI GCNNNNNNNGC 1 cut(s) 1052
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
NlaIII CATG 3 cut(s) 179, 797, 1016
NmuCI GTSAC 1 cut(s) 879
PasI CCCWGGG 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 4 cut(s) 377, 592, 714, 763
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 2 cut(s) 816, 946
PleI GAGTC 5 cut(s) 166, 264, 746, 886, 1019
PpsI GAGTC 5 cut(s) 166, 264, 746, 886, 1019
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 347, 1050
PspGI CCWGG 2 cut(s) 347, 1050
PspPI GGNCC 2 cut(s) 172, 995
PstNI CAGNNNCTG 1 cut(s) 1062
PsuI RGATCY 3 cut(s) 309, 420, 798
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 449, 489, 861
SatI GCNGC 2 cut(s) 815, 945
Sau3AI GATC 7 cut(s) 201, 229, 309, 420, 798, 823, 967
Sau96I GGNCC 2 cut(s) 172, 995
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 5 cut(s) 167, 265, 747, 887, 1019
ScrFI CCNGG 3 cut(s) 171, 349, 1052
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 3 cut(s) 463, 655, 841
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 3 cut(s) 41, 485, 531
SsiI CCGC 2 cut(s) 815, 1036
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 3 cut(s) 169, 347, 1050
StyI CCWWGG 2 cut(s) 884, 1012
TaaI ACNGT 2 cut(s) 188, 954
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 81, 192, 456, 1031
TasI AATT 3 cut(s) 41, 485, 531
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 4 cut(s) 377, 592, 714, 763
Tru1I TTAA 3 cut(s) 449, 489, 861
Tru9I TTAA 3 cut(s) 449, 489, 861
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 1 cut(s) 879
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 1 cut(s) 879
TspDTI ATGAA 5 cut(s) 46, 147, 336, 932, 1002
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 861
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 2 cut(s) 41, 485
XmnI GAANNNNTTC 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.