AT5G45440

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009951
Physical Location & Seq
Reverse (-)
18412059 .. 18413617
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45440.1

Sequence Viewer

Length: 1041 bp
ATGACTCAAGAAGATTCATCGCGCGGATTAACAAGTGTAGGCAGAGTTGACTTCACAAATCGGTTCGCTGATAGATACAACGAATGGCTAGGGACAACTGGTGACGAAACAAAACAGGTGGAGGATCGTGTGGAAACTGATTCTGGACTTCCAGGTCATGATATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGGATCAAAAGTCTTACAAGCTGTTCAAGAGTCTTGTGGTTGTCGGAGAATACGGTGTTGGGAAGACAGCATTATGCCAGCAGATCTTCAATGATTATGATGTGAGGAATGCTTATGCCCCGAGGATTTGGGTATCTATGCATAGCAATGAATCTAAGGAGGGACTTGATGGGAAGATATGTGTGTTGAAGACGATCTTGAAGGGTCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCATAGAGAAGTAGTAGAAGAAGTTTCAAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAGAGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGATGTCCAGGAGATCGATAACTGGGACGAGAAACTCGATGCGAAACTCAACGAGGGTGAAAAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAACCTTGTTGTTCAGAAACATGAGATCCATCGTCTTTGGCCGCTATCTGATTCTAACAGTGTTTGGAAGATATATGAAGCAATGATCCAGAAGAGAGAGAAAGAGTCTCCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACTGTTGGCTGAGCTTGATCCCATGTTGTTTGACGATGGAAAGGCTAACCAGAACGGTTCTAAAGATGGAAAAACCGACTCAGTCGACAACCCCAATTCAGAAGAGAGTAAAACTAAACCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

346

Amino Acids

39.45

Weight (kDa)

5.2

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 57 - 207 1.3e-08 AAA ATPase domain
NB-ARC PF00931 59 - 278 1.6e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 999
AccII CGCG 2 cut(s) 22, 24
AciI CCGC 2 cut(s) 24, 779
AclWI GGATC 5 cut(s) 132, 219, 757, 817, 926
AcoI YGGCCR 1 cut(s) 776
AgsI TTSAA 7 cut(s) 235, 298, 397, 409, 425, 474, 556
AjnI CCWGG 2 cut(s) 151, 597
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 4 cut(s) 229, 488, 877, 928
AluI AGCT 4 cut(s) 229, 488, 877, 928
Alw26I GTCTC 3 cut(s) 500, 849, 894
AlwI GGATC 5 cut(s) 132, 219, 757, 817, 926
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 113, 659
AsuII TTCGAA 1 cut(s) 438
AvaI CYCGRG 1 cut(s) 328
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 3 cut(s) 278, 404, 890
BbvI GCAGC 1 cut(s) 895
BccI CCATC 7 cut(s) 371, 452, 494, 668, 774, 944, 974
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 2 cut(s) 153, 599
BcoDI GTCTC 3 cut(s) 500, 849, 894
BfaI CTAG 2 cut(s) 89, 912
BfmI CTRYAG 1 cut(s) 1037
BglII AGATCT 2 cut(s) 291, 525
BisI GCNGC 2 cut(s) 779, 909
BlpI GCTNAGC 1 cut(s) 924
BlsI GCNGC 2 cut(s) 780, 910
Bme1390I CCNGG 2 cut(s) 153, 599
BmeT110I CYCGRG 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 153, 599
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 3 cut(s) 278, 404, 890
BpmI CTGGAG 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 606
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 2 cut(s) 329, 848
Bse1I ACTGG 2 cut(s) 103, 617
Bse3DI GCAATG 3 cut(s) 191, 361, 825
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 2 cut(s) 153, 599
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 2 cut(s) 329, 848
BseGI GGATG 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 726
BseMI GCAATG 3 cut(s) 191, 361, 825
BseMII CTCAG 3 cut(s) 551, 915, 1008
BseNI ACTGG 2 cut(s) 103, 617
BseXI GCAGC 1 cut(s) 895
Bsh1236I CGCG 2 cut(s) 22, 24
BshFI GGCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 328
BslFI GGGAC 3 cut(s) 106, 384, 629
BsmAI GTCTC 3 cut(s) 500, 849, 894
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 3 cut(s) 106, 384, 629
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 438
Bsp1720I GCTNAGC 1 cut(s) 924
BspACI CCGC 2 cut(s) 24, 779
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 3 cut(s) 552, 916, 1007
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 2 cut(s) 22, 24
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 5 cut(s) 132, 219, 757, 817, 926
BspT104I TTCGAA 1 cut(s) 438
BsrDI GCAATG 3 cut(s) 191, 361, 825
BsrI ACTGG 2 cut(s) 103, 617
BssECI CCNNGG 2 cut(s) 329, 848
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 848
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 153, 599
Bst4CI ACNGT 4 cut(s) 263, 797, 918, 971
Bst6I CTCTTC 3 cut(s) 420, 824, 1011
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 363, 560, 924, 994
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 2 cut(s) 22, 24
BstHHI GCGC 1 cut(s) 24
BstMAI GTCTC 3 cut(s) 500, 849, 894
BstNI CCWGG 2 cut(s) 153, 599
BstSCI CCNGG 2 cut(s) 151, 597
BstSFI CTRYAG 1 cut(s) 1037
BstUI CGCG 2 cut(s) 22, 24
BstV1I GCAGC 1 cut(s) 895
BstV2I GAAGAC 3 cut(s) 278, 404, 890
BstX2I RGATCY 3 cut(s) 291, 525, 762
BstYI RGATCY 3 cut(s) 291, 525, 762
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 1 cut(s) 778
BsuTUI ATCGAT 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 3
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 802
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 606
CspCI CAANNNNNGTGG 4 cut(s) 99, 134, 874, 909
CviAII CATG 3 cut(s) 158, 758, 937
DdeI CTNAG 4 cut(s) 363, 560, 924, 994
DrdI GACNNNNNNGTC 1 cut(s) 153
DseDI GACNNNNNNGTC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 3 cut(s) 420, 824, 1011
EarI CTCTTC 3 cut(s) 420, 824, 1011
Eco130I CCWWGG 1 cut(s) 848
Eco32I GATATC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 151, 597
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 848
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 848
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 3 cut(s) 161, 761, 940
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 3 cut(s) 106, 384, 629
FatI CATG 3 cut(s) 157, 757, 936
FblI GTMKAC 1 cut(s) 999
Fnu4HI GCNGC 2 cut(s) 779, 909
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 779, 909
FspBI CTAG 2 cut(s) 89, 912
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 779, 909
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 778
HhaI GCGC 1 cut(s) 24
Hin1II CATG 3 cut(s) 161, 761, 940
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 2 cut(s) 49, 1000
HindII GTYRAC 2 cut(s) 49, 1000
HphI GGTGA 2 cut(s) 113, 659
Hpy166II GTNNAC 2 cut(s) 49, 1000
Hpy188I TCNGA 7 cut(s) 254, 561, 579, 673, 753, 787, 1015
Hpy188III TCNNGA 7 cut(s) 8, 144, 158, 175, 235, 406, 826
Hpy8I GTNNAC 2 cut(s) 49, 1000
HpyAV CCTTC 2 cut(s) 403, 514
HpyCH4III ACNGT 4 cut(s) 263, 797, 918, 971
HpyCH4V TGCA 3 cut(s) 196, 349, 545
HpyF3I CTNAG 4 cut(s) 363, 560, 924, 994
Hsp92II CATG 3 cut(s) 161, 761, 940
HspAI GCGC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 895
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 89, 912
MaeIII GTNAC 1 cut(s) 101
MflI RGATCY 3 cut(s) 291, 525, 762
MluCI AATT 2 cut(s) 495, 1009
MlyI GAGTC 4 cut(s) 247, 437, 851, 986
MmeI TCCRAC 2 cut(s) 189, 232
MnlI CCTC 8 cut(s) 115, 306, 324, 361, 555, 637, 693, 912
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 153, 599
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 153, 599
MvnI CGCG 2 cut(s) 22, 24
NlaIII CATG 3 cut(s) 161, 761, 940
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 351
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 8 cut(s) 14, 140, 359, 440, 556, 678, 727, 788
PflFI GACNNNGTC 1 cut(s) 995
PfoI TCCNGGA 1 cut(s) 597
PkrI GCNGC 2 cut(s) 780, 910
PleI GAGTC 4 cut(s) 246, 436, 850, 986
PpsI GAGTC 4 cut(s) 246, 436, 850, 986
Psp6I CCWGG 2 cut(s) 151, 597
PspGI CCWGG 2 cut(s) 151, 597
PsuI RGATCY 3 cut(s) 291, 525, 762
PsyI GACNNNGTC 1 cut(s) 995
RseI CAYNNNNRTG 1 cut(s) 354
SalI GTCGAC 1 cut(s) 998
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 779, 909
SchI GAGTC 4 cut(s) 247, 437, 851, 986
ScrFI CCNGG 2 cut(s) 153, 599
SetI ASST 9 cut(s) 120, 157, 231, 490, 566, 744, 879, 930, 1036
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 1037
SfuI TTCGAA 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 495, 1009
SsiI CCGC 2 cut(s) 24, 779
SspMI CTAG 2 cut(s) 89, 912
StyD4I CCNGG 2 cut(s) 151, 597
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 4 cut(s) 263, 797, 918, 971
TaqI TCGA 5 cut(s) 174, 438, 606, 627, 999
TasI AATT 2 cut(s) 495, 1009
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 8 cut(s) 14, 140, 359, 440, 556, 678, 727, 788
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 6, 372, 828, 896
TspRI CASTG 1 cut(s) 802
Tth111I GACNNNGTC 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 999
XspI CTAG 2 cut(s) 89, 912
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.