Rmu_sc0004732.1_g000011

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004732.1
OG0009951
Physical Location & Seq
Reverse (-)
29923 .. 31098
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004732.1_g000011.1.cds

Sequence Viewer

Length: 1176 bp
atggctcaagaaatggaactgcacctgaaagacaagttcatggacggccttgatatgaaggacaagagcatctccaagattccaaggtacaaccaatttcaagagataaagagattgctagaagacatgttcagctcatccacgcctgcaatagtcaagtttccgagtgcaaccaatttcagggacaagctttacaagctcaacaatcttttgaccgactgcaagatgctatcaagaaaacatggtttcaactctccggaggagctaattactattaacagaatccggagagacttaagacagatcaagagggatctccaggccattatgaaggatatatcaaatcgagacgttaatggacaacgtattaatggtgattcaagctcacatgatagagacattttgagatggactactcgtgcagtagatgcaacaaaggtttatggacttgatgatgaggtgttgtccatggaaaacttgcttctcaagaaacgaagtgatgttcatcagttcaaggcaataggcattgtcggcagggatggtataggaaagacaacgctttgccaactgatgttcaacaaagatgaagtgaaaaacaatttcaatccaaggatctgggtgtgcatggccagacggccggatgaagacgaggatgaggatcttaaagtagcaattgtcaaaagaatgttgaggtaccttggagtcgaagaggcaatagtcaagtcggtttgtgatgtaaaacctcgcctagaaggactgctatgcgctctttatctgcaattgttgggcaagaggtatctaattgtgcttgatgatgctagggagacagactcatggtataaagagttggattccagtttgactcatgataagaaatggggtgacagtttcgcatttggatttccaaaaggcagtggaggaagagtcatagttacaagcagaaatgaagacatagcaaatacgatggttgggaaggaaaatgtacatcaccttgagcccatgttggacactgaaagctgctggttaatattcaaagactcggttgacaaagatctgttacttaccattccctcaaactttagatcagaagtaaaacaaaaatgtggtggccttccgttagctgcaaaaatgatgggacgtgcaatgcaggaggaagaagagcgtactagaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

391

Amino Acids

45.07

Weight (kDa)

8.32

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 693
AccIII TCCGGA 2 cut(s) 256, 285
AclWI GGATC 3 cut(s) 321, 620, 666
AcoI YGGCCR 2 cut(s) 627, 635
AfaI GTAC 4 cut(s) 89, 695, 984, 1165
AfiI CCNNNNNNNGG 1 cut(s) 180
AflII CTTAAG 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 7 cut(s) 101, 250, 381, 514, 577, 604, 1033
AjiI CACGTC 1 cut(s) 1139
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 8 cut(s) 135, 190, 199, 265, 384, 1017, 1121, 1173
AluI AGCT 8 cut(s) 135, 190, 199, 265, 384, 1017, 1121, 1173
Alw26I GTCTC 4 cut(s) 285, 342, 390, 818
AlwI GGATC 3 cut(s) 321, 620, 666
Aor13HI TCCGGA 2 cut(s) 256, 285
AoxI GGCC 5 cut(s) 46, 321, 627, 635, 1108
ApeKI GCWGC 2 cut(s) 1017, 1121
AseI ATTAAT 1 cut(s) 369
Asp718I GGTACC 1 cut(s) 693
AspLEI GCGC 1 cut(s) 767
AsuHPI GGTGA 3 cut(s) 386, 893, 980
BalI TGGCCA 1 cut(s) 629
BanI GGYRCC 1 cut(s) 693
BanII GRGCYC 1 cut(s) 999
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 3 cut(s) 129, 651, 954
BbvI GCAGC 2 cut(s) 1004, 1108
BccI CCATC 4 cut(s) 402, 533, 958, 1126
BceAI ACGGC 2 cut(s) 61, 650
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 4 cut(s) 285, 342, 390, 818
BfaI CTAG 5 cut(s) 119, 749, 819, 1167, 1174
BfrI CTTAAG 1 cut(s) 295
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 2 cut(s) 1018, 1122
BlsI GCNGC 2 cut(s) 1019, 1123
Bme1390I CCNGG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 1139
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 4 cut(s) 78, 216, 418, 805
BpiI GAAGAC 3 cut(s) 129, 651, 954
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 470, 1013
BsaBI GATNNNNATC 2 cut(s) 504, 657
BsaJI CCNNGG 4 cut(s) 83, 468, 608, 697
BsaWI WCCGGW 2 cut(s) 256, 285
BsaXI ACNNNNNCTCC 2 cut(s) 909, 939
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 1149
Bse8I GATNNNNATC 2 cut(s) 504, 657
BseAI TCCGGA 2 cut(s) 256, 285
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 4 cut(s) 83, 468, 608, 697
BseGI GGATG 4 cut(s) 137, 544, 646, 658
BseJI GATNNNNATC 2 cut(s) 504, 657
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 1149
BseNI ACTGG 1 cut(s) 855
BseRI GAGGAG 1 cut(s) 275
BseX3I CGGCCG 1 cut(s) 635
BseXI GCAGC 2 cut(s) 1004, 1108
BsgI GTGCAG 2 cut(s) 5, 441
Bsh1285I CGRYCG 1 cut(s) 638
BshFI GGCC 5 cut(s) 48, 323, 629, 637, 1110
BshNI GGYRCC 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 638
BsiSI CCGG 3 cut(s) 257, 286, 638
BslFI GGGAC 2 cut(s) 197, 1149
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 4 cut(s) 285, 342, 390, 818
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 2 cut(s) 197, 1149
BsnI GGCC 5 cut(s) 48, 323, 629, 637, 1110
Bsp1286I GDGCHC 1 cut(s) 999
Bsp13I TCCGGA 2 cut(s) 256, 285
Bsp1407I TGTACA 1 cut(s) 982
Bsp143I GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
Bsp19I CCATGG 1 cut(s) 468
BspANI GGCC 5 cut(s) 48, 323, 629, 637, 1110
BspEI TCCGGA 2 cut(s) 256, 285
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 695
BspPI GGATC 3 cut(s) 321, 620, 666
BspQI GCTCTTC 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 1149
BsrGI TGTACA 1 cut(s) 982
BsrI ACTGG 1 cut(s) 855
BssECI CCNNGG 4 cut(s) 83, 468, 608, 697
BssMI GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 4 cut(s) 83, 468, 608, 697
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 3 cut(s) 702, 916, 1152
BstAFI CTTAAG 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 137, 544, 646, 658
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 6 cut(s) 306, 316, 615, 661, 1054, 1085
BstMAI GTCTC 4 cut(s) 285, 342, 390, 818
BstMBI GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
BstMCI CGRYCG 1 cut(s) 638
BstMWI GCNNNNNNNGC 3 cut(s) 196, 428, 531
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 1004, 1108
BstV2I GAAGAC 3 cut(s) 129, 651, 954
BstX2I RGATCY 4 cut(s) 313, 612, 658, 1051
BstXI CCANNNNNNTGG 1 cut(s) 615
BstYI RGATCY 4 cut(s) 313, 612, 658, 1051
BstZI CGGCCG 1 cut(s) 635
BsuRI GGCC 5 cut(s) 48, 323, 629, 637, 1110
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 1139
BtsCI GGATG 4 cut(s) 137, 544, 646, 658
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 2 cut(s) 919, 1008
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 767
Csp6I GTAC 4 cut(s) 88, 694, 983, 1164
CviAII CATG 9 cut(s) 40, 127, 242, 389, 469, 625, 834, 866, 1000
CviQI GTAC 4 cut(s) 88, 694, 983, 1164
DpnI GATC 6 cut(s) 305, 315, 614, 660, 1053, 1084
DpnII GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
EaeI YGGCCR 2 cut(s) 627, 635
EagI CGGCCG 1 cut(s) 635
Eam1104I CTCTTC 3 cut(s) 702, 916, 1152
EarI CTCTTC 3 cut(s) 702, 916, 1152
EclXI CGGCCG 1 cut(s) 635
Eco130I CCWWGG 4 cut(s) 83, 468, 608, 697
Eco24I GRGCYC 1 cut(s) 999
Eco52I CGGCCG 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 4 cut(s) 83, 468, 608, 697
EcoT38I GRGCYC 1 cut(s) 999
ErhI CCWWGG 4 cut(s) 83, 468, 608, 697
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 9 cut(s) 43, 130, 245, 392, 472, 628, 837, 869, 1003
FaqI GGGAC 2 cut(s) 197, 1149
FatI CATG 9 cut(s) 39, 126, 241, 388, 468, 624, 833, 865, 999
Fnu4HI GCNGC 2 cut(s) 1018, 1122
FokI GGATG 4 cut(s) 124, 551, 653, 665
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 2 cut(s) 1018, 1122
FspBI CTAG 5 cut(s) 119, 749, 819, 1167, 1174
GlaI GCGC 1 cut(s) 766
GluI GCNGC 2 cut(s) 1018, 1122
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 5 cut(s) 48, 323, 629, 637, 1110
HapII CCGG 3 cut(s) 257, 286, 638
HhaI GCGC 1 cut(s) 767
Hin1II CATG 9 cut(s) 43, 130, 245, 392, 472, 628, 837, 869, 1003
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 9 cut(s) 79, 282, 377, 702, 830, 851, 862, 924, 1037
HpaII CCGG 3 cut(s) 257, 286, 638
HphI GGTGA 3 cut(s) 386, 893, 980
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188I TCNGA 2 cut(s) 165, 1087
Hpy188III TCNNGA 9 cut(s) 8, 101, 234, 257, 286, 307, 347, 487, 866
Hpy8I GTNNAC 1 cut(s) 1045
HpyAV CCTTC 5 cut(s) 52, 325, 746, 967, 1121
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4IV ACGT 3 cut(s) 351, 364, 1138
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 428, 531
HpySE526I ACGT 3 cut(s) 351, 364, 1138
Hsp92II CATG 9 cut(s) 43, 130, 245, 392, 472, 628, 837, 869, 1003
HspAI GCGC 1 cut(s) 765
Kpn2I TCCGGA 2 cut(s) 256, 285
KpnI GGTACC 1 cut(s) 697
Kzo9I GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
LguI GCTCTTC 1 cut(s) 1152
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 1004, 1108
LweI GCATC 4 cut(s) 78, 216, 418, 805
MaeI CTAG 5 cut(s) 119, 749, 819, 1167, 1174
MaeII ACGT 3 cut(s) 351, 364, 1138
MaeIII GTNAC 3 cut(s) 881, 931, 1056
MalI GATC 6 cut(s) 305, 315, 614, 660, 1053, 1084
MboI GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
MboII GAAGA 7 cut(s) 134, 656, 719, 933, 959, 1166, 1169
MfeI CAATTG 2 cut(s) 672, 779
MflI RGATCY 4 cut(s) 313, 612, 658, 1051
MhlI GDGCHC 1 cut(s) 999
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 7 cut(s) 95, 175, 267, 598, 672, 779, 801
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 5 cut(s) 711, 824, 856, 933, 1031
MmeI TCCRAC 2 cut(s) 828, 984
Mox20I TGGCCA 1 cut(s) 629
MroI TCCGGA 2 cut(s) 256, 285
MscI TGGCCA 1 cut(s) 629
MseI TTAA 6 cut(s) 276, 296, 354, 369, 663, 1025
Msp20I TGGCCA 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 295
MspI CCGG 3 cut(s) 257, 286, 638
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 2 cut(s) 672, 779
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 196, 428, 531
NcoI CCATGG 1 cut(s) 468
NdeII GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
NlaIII CATG 9 cut(s) 43, 130, 245, 392, 472, 628, 837, 869, 1003
NlaIV GGNNCC 1 cut(s) 695
NmuCI GTSAC 1 cut(s) 881
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 865
PciI ACATGT 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 1152
PfeI GAWTC 4 cut(s) 79, 282, 377, 851
PkrI GCNGC 2 cut(s) 1019, 1123
PleI GAGTC 5 cut(s) 710, 824, 856, 932, 1031
PpsI GAGTC 5 cut(s) 710, 824, 856, 932, 1031
PscI ACATGT 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 695
PsuI RGATCY 4 cut(s) 313, 612, 658, 1051
RsaI GTAC 4 cut(s) 89, 695, 984, 1165
RsaNI GTAC 4 cut(s) 88, 694, 983, 1164
SapI GCTCTTC 1 cut(s) 1152
SaqAI TTAA 6 cut(s) 276, 296, 354, 369, 663, 1025
SatI GCNGC 2 cut(s) 1018, 1122
Sau3AI GATC 6 cut(s) 303, 313, 612, 658, 1051, 1082
SchI GAGTC 5 cut(s) 711, 824, 856, 933, 1031
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 4 cut(s) 78, 216, 418, 805
SmlI CTYRAG 4 cut(s) 6, 295, 485, 992
SmoI CTYRAG 4 cut(s) 6, 295, 485, 992
Sse9I AATT 7 cut(s) 95, 175, 267, 598, 672, 779, 801
SspI AATATT 1 cut(s) 1029
SspMI CTAG 5 cut(s) 119, 749, 819, 1167, 1174
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 4 cut(s) 83, 468, 608, 697
TaaI ACNGT 1 cut(s) 887
TaiI ACGT 3 cut(s) 354, 367, 1141
TaqI TCGA 2 cut(s) 346, 705
TaqII GACCGA 1 cut(s) 230
TasI AATT 7 cut(s) 95, 175, 267, 598, 672, 779, 801
TatI WGTACW 1 cut(s) 982
TfiI GAWTC 4 cut(s) 79, 282, 377, 851
Tru1I TTAA 6 cut(s) 276, 296, 354, 369, 663, 1025
Tru9I TTAA 6 cut(s) 276, 296, 354, 369, 663, 1025
TscAI CASTG 2 cut(s) 919, 1015
TseFI GTSAC 1 cut(s) 881
TseI GCWGC 2 cut(s) 1017, 1121
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 7 cut(s) 28, 71, 344, 494, 600, 657, 960
TspGWI ACGGA 1 cut(s) 1104
TspRI CASTG 2 cut(s) 919, 1015
Vha464I CTTAAG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 369
XceI RCATGY 1 cut(s) 130
XspI CTAG 5 cut(s) 119, 749, 819, 1167, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.