Prupe.7G078700_v2.0.a1

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009951
Physical Location & Seq
Forward (+)
11451919 .. 11453595
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G078700.1

Sequence Viewer

Length: 1152 bp
ATGGCTCAAGAAATTGAACATTATCTAATGGAACAATTCGAGAATGGTCTTGACGGGAATGACAAAATTATCTCCAAGATTCCCAGGTACAGCCAATTTCAAGCAATAAAAACAGTGCTTAAAGAAATTTTCAGGTCATCCTCCTCGCTTGTAGATCAACCACTCAGGGACAAGCTATACAACCTCAACAATGCTTTGACTGAGTGCCAGATTCTATCAAGGAAACGCGGTTTCTACTCTCCTGAGGAGCTACTGACCATCAACAGAATCAGAATGGAGTTAAAACAGATCAAAAAGGAACTCAAGACTATCCTAGGAAACAGTTATAGAGGATCGAATCAGAACATTGATGAACAAATTGTAAGTATTAGCTCAAAGGACATGGAGCCTTTCAGGTGGTCAACTCGTTCAGTGGATGCATCCAAGGTGTATGGATTTGACGATGATGTGTTGTCAATGGAAAAGTTGCTTGTCCAACAAGAAAGTCGAGATCGATTCAAGGCAATAGGCTTTGTTGGTAGGGAAGGGATAGGAAAAACAACACTTTGCCAATTGGTATTCAACAAACCAGAGGTGAAAAACAACTTCCTTCCAAGGATCTGGGTGTGCATGGCCAGAGACCCGGATGGCCACGAAGGTGAAGATCTGAAAGTAGCAATTGTCAAAAGAATGTTGGTGTACCTTGGAGTTGGAAAGGAGACGGTGAAGTCCATTTTCGATGAGAAGCATGGCCTCGAAGGACTGCTGTGTGCTCTCTACCAGCAATTGGTGGGCAAGAGGTATCTGATTGTGCTTGATGATGCTAGGGAGACCGATTCATGGTACGGACAGTTGGATTCTTGTTTGAGCCGTGATAAGAAATGGGATGATGGGTTTGCATTTGGATTTCCAAAAGGCCATGGGGGAAGAGTCATAGCTACAAGCAGGAATGAAGAAGTAGCAAAGATGATGGTTGGGGAGAAAAATATACACCACCTTTTGCCACTTTCAGATCCCGACATCTGCTGGGCAATTTTCAAGGACACGGTTGAGGATGATCGGGCTCTATTGAATGCCTCAAACTTGGATGATCTGAAGTTGGAAATCAAACTAAAATGCGGTGGCCTTCCATTAGCAGCAAAAATGATGGGACAGGCAATGCGGACGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

384

Amino Acids

43.7

Weight (kDa)

6.63

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 766
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 228, 1098, 1141
AclWI GGATC 3 cut(s) 340, 605, 986
AcoI YGGCCR 2 cut(s) 612, 628
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 1094
AfaI GTAC 3 cut(s) 89, 680, 824
AfiI CCNNNNNNNGG 2 cut(s) 766, 819
AgsI TTSAA 6 cut(s) 17, 101, 499, 562, 1018, 1051
AjnI CCWGG 1 cut(s) 83
AleI CACNNNNGTG 1 cut(s) 636
AluBI AGCT 4 cut(s) 175, 250, 372, 917
AluI AGCT 4 cut(s) 175, 250, 372, 917
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 3 cut(s) 612, 692, 803
AlwI GGATC 3 cut(s) 340, 605, 986
AoxI GGCC 5 cut(s) 612, 628, 730, 895, 1102
ApeKI GCWGC 1 cut(s) 1115
ApoI RAATTY 1 cut(s) 126
AspA2I CCTAGG 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 586, 650, 715
AvrII CCTAGG 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 243
BalI TGGCCA 2 cut(s) 614, 630
BanII GRGCYC 1 cut(s) 1045
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 1127
BccI CCATC 5 cut(s) 266, 620, 863, 943, 1120
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 3 cut(s) 612, 692, 803
BfaI CTAG 2 cut(s) 314, 804
BglII AGATCT 1 cut(s) 643
BisI GCNGC 1 cut(s) 1116
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 1 cut(s) 1117
Bme1390I CCNGG 2 cut(s) 85, 623
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 2 cut(s) 85, 623
BmsI GCATC 3 cut(s) 406, 428, 790
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 623
Bsa29I ATCGAT 1 cut(s) 493
BsaI GGTCTC 2 cut(s) 612, 803
BsaJI CCNNGG 6 cut(s) 83, 313, 423, 593, 682, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 819
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 493
BseDI CCNNGG 6 cut(s) 83, 313, 423, 593, 682, 898
BseGI GGATG 7 cut(s) 137, 419, 421, 631, 871, 1039, 1072
BseLI CCNNNNNNNGG 2 cut(s) 766, 819
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 3 cut(s) 178, 192, 234
BseRI GAGGAG 2 cut(s) 133, 260
BseXI GCAGC 1 cut(s) 1127
BseYI CCCAGC 1 cut(s) 1005
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 5 cut(s) 614, 630, 732, 897, 1104
BshVI ATCGAT 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 1 cut(s) 623
BslFI GGGAC 2 cut(s) 182, 1143
BslI CCNNNNNNNGG 2 cut(s) 766, 819
BsmAI GTCTC 3 cut(s) 612, 692, 803
BsmBI CGTCTC 1 cut(s) 692
BsmFI GGGAC 2 cut(s) 182, 1143
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 5 cut(s) 614, 630, 732, 897, 1104
Bso31I GGTCTC 2 cut(s) 612, 803
Bsp1286I GDGCHC 2 cut(s) 754, 1045
Bsp143I GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
Bsp19I CCATGG 1 cut(s) 898
BspACI CCGC 3 cut(s) 228, 1098, 1141
BspANI GGCC 5 cut(s) 614, 630, 732, 897, 1104
BspCNI CTCAG 3 cut(s) 177, 193, 235
BspDI ATCGAT 1 cut(s) 493
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 3 cut(s) 340, 605, 986
BspTNI GGTCTC 2 cut(s) 612, 803
BsrDI GCAATG 1 cut(s) 1143
BssECI CCNNGG 6 cut(s) 83, 313, 423, 593, 682, 898
BssMI GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
BssT1I CCWWGG 5 cut(s) 313, 423, 593, 682, 898
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 5 cut(s) 115, 323, 703, 831, 1027
Bst6I CTCTTC 1 cut(s) 901
BstDEI CTNAG 3 cut(s) 164, 201, 243
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 7 cut(s) 137, 419, 421, 631, 871, 1039, 1072
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 9 cut(s) 157, 291, 335, 493, 600, 646, 994, 1039, 1072
BstMAI GTCTC 3 cut(s) 612, 692, 803
BstMBI GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 621
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 1127
BstX2I RGATCY 3 cut(s) 597, 643, 991
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 3 cut(s) 597, 643, 991
Bsu15I ATCGAT 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 5 cut(s) 614, 630, 732, 897, 1104
BsuTUI ATCGAT 1 cut(s) 493
BtgI CCRYGG 1 cut(s) 898
BtsCI GGATG 7 cut(s) 137, 419, 421, 631, 871, 1039, 1072
BtsIMutI CAGTG 2 cut(s) 120, 417
ClaI ATCGAT 1 cut(s) 493
Csp6I GTAC 3 cut(s) 88, 679, 823
CviAII CATG 5 cut(s) 382, 610, 728, 819, 899
CviQI GTAC 3 cut(s) 88, 679, 823
DdeI CTNAG 3 cut(s) 164, 201, 243
DpnI GATC 9 cut(s) 156, 290, 334, 492, 599, 645, 993, 1038, 1071
DpnII GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
DrdI GACNNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 2 cut(s) 612, 628
Eam1104I CTCTTC 1 cut(s) 901
EarI CTCTTC 1 cut(s) 901
Eco130I CCWWGG 5 cut(s) 313, 423, 593, 682, 898
Eco24I GRGCYC 1 cut(s) 1045
Eco31I GGTCTC 2 cut(s) 612, 803
Eco57I CTGAAG 1 cut(s) 1094
Eco81I CCTNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 5 cut(s) 313, 423, 593, 682, 898
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 5 cut(s) 313, 423, 593, 682, 898
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 5 cut(s) 385, 613, 731, 822, 902
FaqI GGGAC 2 cut(s) 182, 1143
FatI CATG 5 cut(s) 381, 609, 727, 818, 898
Fnu4HI GCNGC 1 cut(s) 1116
FokI GGATG 7 cut(s) 124, 406, 428, 638, 878, 1046, 1079
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 1 cut(s) 1116
FspBI CTAG 2 cut(s) 314, 804
GluI GCNGC 1 cut(s) 1116
GsaI CCCAGC 1 cut(s) 1009
HaeIII GGCC 5 cut(s) 614, 630, 732, 897, 1104
HapII CCGG 1 cut(s) 623
Hin1II CATG 5 cut(s) 385, 613, 731, 822, 902
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 8 cut(s) 79, 211, 267, 337, 495, 815, 836, 909
HpaII CCGG 1 cut(s) 623
HphI GGTGA 3 cut(s) 586, 650, 715
Hpy166II GTNNAC 2 cut(s) 402, 679
Hpy188I TCNGA 6 cut(s) 272, 342, 648, 786, 991, 1074
Hpy188III TCNNGA 7 cut(s) 8, 40, 50, 242, 304, 488, 995
Hpy8I GTNNAC 2 cut(s) 402, 679
HpyAV CCTTC 5 cut(s) 518, 599, 629, 731, 1115
HpyCH4III ACNGT 5 cut(s) 115, 323, 703, 831, 1027
HpyCH4V TGCA 3 cut(s) 419, 609, 878
HpyF3I CTNAG 3 cut(s) 164, 201, 243
Hsp92II CATG 5 cut(s) 385, 613, 731, 822, 902
Kzo9I GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
LmnI GCTCC 2 cut(s) 247, 385
Lsp1109I GCAGC 1 cut(s) 1127
LweI GCATC 3 cut(s) 406, 428, 790
MaeI CTAG 2 cut(s) 314, 804
MalI GATC 9 cut(s) 156, 290, 334, 492, 599, 645, 993, 1038, 1071
MboI GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
MboII GAAGA 3 cut(s) 653, 918, 944
MfeI CAATTG 3 cut(s) 551, 657, 764
MflI RGATCY 3 cut(s) 597, 643, 991
MhlI GDGCHC 2 cut(s) 754, 1045
MlsI TGGCCA 2 cut(s) 614, 630
MluNI TGGCCA 2 cut(s) 614, 630
MlyI GAGTC 1 cut(s) 918
MmeI TCCRAC 4 cut(s) 499, 670, 813, 1059
Mox20I TGGCCA 2 cut(s) 614, 630
Mph1103I ATGCAT 1 cut(s) 421
MscI TGGCCA 2 cut(s) 614, 630
MseI TTAA 2 cut(s) 120, 281
MslI CAYNNNNRTG 1 cut(s) 636
Msp20I TGGCCA 2 cut(s) 614, 630
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 2 cut(s) 85, 623
MunI CAATTG 3 cut(s) 551, 657, 764
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 1 cut(s) 228
NciI CCSGG 1 cut(s) 623
NcoI CCATGG 1 cut(s) 898
NdeII GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
NlaIII CATG 5 cut(s) 385, 613, 731, 822, 902
NlaIV GGNNCC 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 421
OliI CACNNNNGTG 1 cut(s) 636
PctI GAATGC 1 cut(s) 1057
PfeI GAWTC 7 cut(s) 79, 211, 267, 337, 495, 815, 836
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 1 cut(s) 1117
PleI GAGTC 1 cut(s) 917
PpsI GAGTC 1 cut(s) 917
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 1005
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 387
PsuI RGATCY 3 cut(s) 597, 643, 991
RsaI GTAC 3 cut(s) 89, 680, 824
RsaNI GTAC 3 cut(s) 88, 679, 823
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 2 cut(s) 120, 281
SatI GCNGC 1 cut(s) 1116
Sau3AI GATC 9 cut(s) 154, 288, 332, 490, 597, 643, 991, 1036, 1069
SchI GAGTC 1 cut(s) 918
ScrFI CCNGG 2 cut(s) 85, 623
SduI GDGCHC 2 cut(s) 754, 1045
SfaNI GCATC 3 cut(s) 406, 428, 790
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 6, 302
SmoI CTYRAG 2 cut(s) 6, 302
SsiI CCGC 3 cut(s) 228, 1098, 1141
SspMI CTAG 2 cut(s) 314, 804
StyD4I CCNGG 2 cut(s) 83, 621
StyI CCWWGG 5 cut(s) 313, 423, 593, 682, 898
TaaI ACNGT 5 cut(s) 115, 323, 703, 831, 1027
TaqI TCGA 6 cut(s) 39, 335, 487, 493, 717, 735
TaqII GACCGA 1 cut(s) 827
TfiI GAWTC 7 cut(s) 79, 211, 267, 337, 495, 815, 836
Tru1I TTAA 2 cut(s) 120, 281
Tru9I TTAA 2 cut(s) 120, 281
TscAI CASTG 2 cut(s) 120, 417
TseI GCWGC 1 cut(s) 1115
TspDTI ATGAA 3 cut(s) 366, 807, 945
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 2 cut(s) 120, 417
Van91I CCANNNNNTGG 1 cut(s) 766
XapI RAATTY 1 cut(s) 126
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 2 cut(s) 314, 804
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.