RchiOBHm_Chr3g0479501

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009951
Physical Location & Seq
Forward (+)
25362989 .. 25363705
717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44458

Sequence Viewer

Length: 717 bp
ATGGAAAACTTGCTTCTCAAGAAAGGAAGTGATGTTCATCAGTTCAAGGCAATAGGCATTGTCGGCAGGGATGGTATAGGAAAGACAACGCTTTGCCAACTGATGTTCAACAAAGATGAAGTGAAAAACAACTTCAATCCAAGGATCTGGGTGTGCATGGCCAGACACCCGGATGACGACGAGGATGAGGATCTTAAATTAGCAATTGTCAAAAGAATGTTGAGGTACCTTGGAGTCGAAGAGGCAATAGTCAAGTCGATTTGTGATGTAAAACCTGGCCTAGAAGGACTGCTATGTGCTCTTTATCTGCAATTGTTGGGCAAGAGGTATCTAATTGTGCTTGATGATGCTAGGGAGACAGACTCATGGTATAAAGAGTTGGATTCCAGTTTGACTCTTGATAAGAAATGGGGTGACAGTTTCGCATATGGATTTCCAAAAGGCAGTGGAGGAAGAGTCATAGTTACAAGCAGAAATGAAGACATAGCAAATATGATGGTTGGGAAGGAAAATATACATCACCTTGAGCCCATGTTGGACACTAAAAGCTGCTGGGCAATATTCACAGACTCGGTTGACGAATATCTGTTACCTACCATTCCCTCAATCTTGGAAGAACTAAAATCAGAAGTAAAACAAAAATGTGGTGGCCTTCCGTTAGCTGCAAAAATGATGGGGCGTGCAATGCAGGAGGAAGGAGAGCGTACTAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

238

Amino Acids

26.87

Weight (kDa)

5.53

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 13 - 192 1.5e-21 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 225
AclWI GGATC 2 cut(s) 152, 198
AcoI YGGCCR 1 cut(s) 159
AfaI GTAC 2 cut(s) 227, 706
AgsI TTSAA 3 cut(s) 46, 109, 136
AjnI CCWGG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 3 cut(s) 549, 662, 714
AluI AGCT 3 cut(s) 549, 662, 714
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 152, 198
AoxI GGCC 3 cut(s) 159, 277, 649
ApeKI GCWGC 2 cut(s) 549, 662
Asp718I GGTACC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 425, 512
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 536, 649
BccI CCATC 3 cut(s) 65, 490, 667
BciT130I CCWGG 1 cut(s) 276
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 4 cut(s) 281, 351, 708, 715
BisI GCNGC 2 cut(s) 550, 663
BlsI GCNGC 2 cut(s) 551, 664
Bme1390I CCNGG 2 cut(s) 170, 276
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 170, 276
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 170
BsaBI GATNNNNATC 2 cut(s) 36, 189
BsaJI CCNNGG 2 cut(s) 140, 229
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 690
Bse8I GATNNNNATC 2 cut(s) 36, 189
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 140, 229
BseGI GGATG 3 cut(s) 76, 178, 190
BseJI GATNNNNATC 2 cut(s) 36, 189
BseMI GCAATG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 536, 649
BseYI CCCAGC 1 cut(s) 552
BshFI GGCC 3 cut(s) 161, 279, 651
BshNI GGYRCC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 3 cut(s) 161, 279, 651
Bsp1286I GDGCHC 2 cut(s) 301, 531
Bsp143I GATC 2 cut(s) 144, 190
BspANI GGCC 3 cut(s) 161, 279, 651
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 2 cut(s) 152, 198
BspT107I GGYRCC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 140, 229
BssMI GATC 2 cut(s) 144, 190
BssT1I CCWWGG 2 cut(s) 140, 229
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 2 cut(s) 234, 448
BstC8I GCNNGC 1 cut(s) 681
BstF5I GGATG 3 cut(s) 76, 178, 190
BstKTI GATC 2 cut(s) 147, 193
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 144, 190
BstMWI GCNNNNNNNGC 2 cut(s) 63, 685
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 168, 274
BstV1I GCAGC 2 cut(s) 536, 649
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 144, 190
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 2 cut(s) 144, 190
BsuRI GGCC 3 cut(s) 161, 279, 651
BtsCI GGATG 3 cut(s) 76, 178, 190
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 681
Csp6I GTAC 2 cut(s) 226, 705
CviAII CATG 3 cut(s) 157, 366, 532
CviJI RGCY 7 cut(s) 161, 279, 529, 549, 651, 662, 714
CviKI_1 RGCY 7 cut(s) 161, 279, 529, 549, 651, 662, 714
CviQI GTAC 2 cut(s) 226, 705
DpnI GATC 2 cut(s) 146, 192
DpnII GATC 2 cut(s) 144, 190
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 234, 448
EarI CTCTTC 2 cut(s) 234, 448
Eco130I CCWWGG 2 cut(s) 140, 229
Eco24I GRGCYC 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 140, 229
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 2 cut(s) 140, 229
FaeI CATG 3 cut(s) 160, 369, 535
FatI CATG 3 cut(s) 156, 365, 531
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 550, 663
FokI GGATG 3 cut(s) 83, 185, 197
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 550, 663
FspBI CTAG 4 cut(s) 281, 351, 708, 715
GluI GCNGC 2 cut(s) 550, 663
GsaI CCCAGC 1 cut(s) 556
HaeIII GGCC 3 cut(s) 161, 279, 651
HapII CCGG 1 cut(s) 170
Hin1II CATG 3 cut(s) 160, 369, 535
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 6 cut(s) 234, 362, 383, 394, 456, 569
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 425, 512
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 2 cut(s) 19, 398
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 278, 499, 662, 689
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4V TGCA 5 cut(s) 156, 310, 665, 683, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 685
Hsp92II CATG 3 cut(s) 160, 369, 535
KpnI GGTACC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 144, 190
LpnPI CCDG 9 cut(s) 52, 133, 175, 183, 261, 288, 400, 538, 674
Lsp1109I GCAGC 2 cut(s) 536, 649
LweI GCATC 1 cut(s) 337
MaeI CTAG 4 cut(s) 281, 351, 708, 715
MaeIII GTNAC 3 cut(s) 413, 463, 588
MalI GATC 2 cut(s) 146, 192
MboI GATC 2 cut(s) 144, 190
MboII GAAGA 4 cut(s) 251, 465, 491, 626
MfeI CAATTG 2 cut(s) 204, 311
MflI RGATCY 2 cut(s) 144, 190
MhlI GDGCHC 2 cut(s) 301, 531
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 4 cut(s) 197, 204, 311, 333
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 5 cut(s) 243, 356, 388, 465, 563
MmeI TCCRAC 2 cut(s) 360, 516
MnlI CCTC 8 cut(s) 175, 181, 216, 235, 318, 443, 613, 685
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 170, 276
MunI CAATTG 2 cut(s) 204, 311
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 63, 685
NciI CCSGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 427
NdeII GATC 2 cut(s) 144, 190
NlaIII CATG 3 cut(s) 160, 369, 535
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 551, 664
PleI GAGTC 5 cut(s) 242, 356, 388, 464, 563
PpsI GAGTC 5 cut(s) 242, 356, 388, 464, 563
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 227
PsuI RGATCY 2 cut(s) 144, 190
RsaI GTAC 2 cut(s) 227, 706
RsaNI GTAC 2 cut(s) 226, 705
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 550, 663
Sau3AI GATC 2 cut(s) 144, 190
SchI GAGTC 5 cut(s) 243, 356, 388, 465, 563
ScrFI CCNGG 2 cut(s) 170, 276
SduI GDGCHC 2 cut(s) 301, 531
SetI ASST 9 cut(s) 227, 231, 277, 329, 525, 551, 595, 664, 716
SfaNI GCATC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 17, 524
SmoI CTYRAG 2 cut(s) 17, 524
Sse9I AATT 4 cut(s) 197, 204, 311, 333
SspI AATATT 1 cut(s) 561
SspMI CTAG 4 cut(s) 281, 351, 708, 715
StyD4I CCNGG 2 cut(s) 168, 274
StyI CCWWGG 2 cut(s) 140, 229
TaaI ACNGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 237, 257
TasI AATT 4 cut(s) 197, 204, 311, 333
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 549, 662
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 26, 132, 492
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 1 cut(s) 451
XspI CTAG 4 cut(s) 281, 351, 708, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.