FvH4_6g22150

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009951
Physical Location & Seq
Forward (+)
15820965 .. 15822737
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22150.t1

Sequence Viewer

Length: 1179 bp
ATGGCTCATCAAGAAATGGAAGCGCACCTGAAAGACAAGTTTCTGAACGGCCTTAGTATGAAGGACAAAAGCATCTCCAAGATTCCACGGTACCACCAATTTCAAGATATAAAGAATTTGCTAGAAGTCATGTTCAGCTCATCCACGCCTGCAGATCCATCAGTCAGGGACAAGCTTTACAAGCTCAACAATCTCTTGACCGAGTGCAAGATGCTATCAAGAAAACATTGTTTCAACTCCCCGGAGGAGCTAATTACTATTCACAGAATCCGGAGAGACTTGAGGCTGATCAAGAAGGAAATCCAGGCCATTGTCTCGGAGGAAGCATCAACTCGAGGCAATAGTACTGAAGAACGTAATACTGGTGATTCAAGCTCACCTGATATAGGCATTTTGAGATGGACTACTCGTGCAGTAGATGCAACAAAGGTTTATGGATTTGATGATGAGGTGTTGTCATTGGAAAACTTGCTTCTCAAGAAAGGAAGTGATGTTCATCAGTTCAAGGCTGTAGGCATTGTTGGCAGGGATGGTATAGGAAAGACAACGCTTTGCCAACTGATGTTCAACAAAGAGGAAGTGAAAAAAGACTTCAATCCAAGGATCTGGGTGTGCATGGCCAGACACCCGGATGAAGACAAGGCTGAGGATCTTAAAGTAGCAATTGTCAAAAGAATGTTGAAGTACCTTGGAGTCGAAGAGGCGATAGTCAAGTCGGTTTGTGATGTAAAACCTGGCCTAGAAGGACTGCTATGTGCTCTTTATCTGCAATTGTTAGGAAAGAGGTATCTAATTGTGCTTGATGATGCTAGGGAGACAGACTCATGGTATAAAGAGTTGGATTCCAGTTTGACTCATGATAAGAAATGGGGTGACAGCTTCGGATTTGGATTTCCGAAAGACAGTGGAGGAAGAGTCATAGTTACAAGCAGAAATGAAGAACTAGCAAACATCATGGTTGGGAAGGAAAATGTACATCATCTTGAGCCAATGTTGGACAATGAAAGCTGCTGGGCGATATTCAAAGACTCGGTTATTGACGAAGATCTGTTACCAGCCAATCACTCAACCTTGGAAGCAGAACTGAAATTAGAAGTAAAACAGAAGTGTGGCGGTCTTCCGTTAGCTGCGAAAATGATGGGACAAGCAATGCAGAAGCAGGAAGAAGAGCGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

393

Amino Acids

44.53

Weight (kDa)

6.17

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 156 - 349 4.7e-23 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19060 AT5G45440 AT5G45490 AT5G45490
fragaria_vesca FvH4_6g22150
malus_domestica MD12G1059800.v1.1 MD14G1055400.v1.1
prunus_persica Prupe.7G078500_v2.0.a1 Prupe.7G078700_v2.0.a1
pyrus_communis pycom14g04570
rosa_chinensis RchiOBHm_Chr3g0479501
rosa_laevigata RLG00000023564
rosa_multiflora Rmu_sc0004732.1_g000011
rosa_roxburghii Rroxscaffold_6G00402200
rosa_rugosa Rorug03G0175800 Rorug03G0175900
rosa_samantha Rh3AG226800 Rh3BG259900 Rh3CG256600 Rh3DG252400
rosa_wichuraiana Rw3G020260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 1 cut(s) 1113
AclWI GGATC 3 cut(s) 149, 611, 657
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 5 cut(s) 92, 346, 686, 975, 1174
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 8 cut(s) 104, 235, 372, 505, 568, 595, 682, 1024
AjnI CCWGG 2 cut(s) 303, 733
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 8 cut(s) 138, 175, 184, 250, 375, 879, 1008, 1127
AluI AGCT 8 cut(s) 138, 175, 184, 250, 375, 879, 1008, 1127
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 270, 319, 809
AlwI GGATC 3 cut(s) 149, 611, 657
Ama87I CYCGRG 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 4 cut(s) 49, 306, 618, 736
ApeKI GCWGC 2 cut(s) 1008, 1127
ApoI RAATTY 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 242, 629
AsuHPI GGTGA 3 cut(s) 369, 377, 884
AvaI CYCGRG 1 cut(s) 333
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 1035, 1067
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 642, 1109
Bbv12I GWGCWC 1 cut(s) 760
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 2 cut(s) 995, 1114
BccI CCATC 4 cut(s) 166, 393, 524, 1132
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 305, 735
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 2 cut(s) 242, 629
BcoDI GTCTC 3 cut(s) 270, 319, 809
BfaI CTAG 4 cut(s) 122, 740, 810, 944
BfmI CTRYAG 2 cut(s) 150, 510
BglII AGATCT 1 cut(s) 1045
BisI GCNGC 2 cut(s) 1009, 1128
BlsI GCNGC 2 cut(s) 1010, 1129
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 4 cut(s) 242, 305, 629, 735
BmeT110I CYCGRG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 4 cut(s) 242, 305, 629, 735
BmsI GCATC 5 cut(s) 81, 201, 335, 409, 796
BpiI GAAGAC 2 cut(s) 642, 1109
BplI GAGNNNNNCTC 2 cut(s) 806, 838
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 3 cut(s) 301, 461, 1004
BpuMI CCSGG 2 cut(s) 242, 629
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 86, 240, 599, 688, 1071
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 367, 846
Bse3DI GCAATG 1 cut(s) 1155
Bse8I GATNNNNATC 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 270
BseBI CCWGG 2 cut(s) 305, 735
BseDI CCNNGG 5 cut(s) 86, 240, 599, 688, 1071
BseGI GGATG 3 cut(s) 140, 535, 637
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 1155
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 367, 846
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 995, 1114
BseYI CCCAGC 1 cut(s) 1011
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 4 cut(s) 51, 308, 620, 738
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 3 cut(s) 242, 271, 629
BslFI GGGAC 2 cut(s) 182, 1155
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 270, 319, 809
BsmFI GGGAC 2 cut(s) 182, 1155
BsnI GGCC 4 cut(s) 51, 308, 620, 738
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 760
Bsp13I TCCGGA 1 cut(s) 270
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 5 cut(s) 154, 288, 603, 649, 1045
BspACI CCGC 1 cut(s) 1113
BspANI GGCC 4 cut(s) 51, 308, 620, 738
BspCNI CTCAG 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 270
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 3 cut(s) 149, 611, 657
BspQI GCTCTTC 1 cut(s) 1161
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 1155
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 367, 846
BssECI CCNNGG 5 cut(s) 86, 240, 599, 688, 1071
BssMI GATC 5 cut(s) 154, 288, 603, 649, 1045
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 3 cut(s) 599, 688, 1071
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 305, 735
Bst4CI ACNGT 2 cut(s) 90, 905
Bst6I CTCTTC 3 cut(s) 693, 907, 1161
BstAPI GCANNNNNTGC 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 973
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 140, 535, 637
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 157, 291, 606, 652, 1048
BstMAI GTCTC 3 cut(s) 270, 319, 809
BstMBI GATC 5 cut(s) 154, 288, 603, 649, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 181, 419, 522
BstNI CCWGG 2 cut(s) 305, 735
BstSCI CCNGG 4 cut(s) 240, 303, 627, 733
BstSFI CTRYAG 2 cut(s) 150, 510
BstV1I GCAGC 2 cut(s) 995, 1114
BstV2I GAAGAC 2 cut(s) 642, 1109
BstX2I RGATCY 4 cut(s) 154, 603, 649, 1045
BstXI CCANNNNNNTGG 1 cut(s) 606
BstYI RGATCY 4 cut(s) 154, 603, 649, 1045
BsuRI GGCC 4 cut(s) 51, 308, 620, 738
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 140, 535, 637
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 5 cut(s) 91, 345, 685, 974, 1173
CviAII CATG 6 cut(s) 130, 616, 825, 857, 955, 1176
CviQI GTAC 5 cut(s) 91, 345, 685, 974, 1173
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 5 cut(s) 156, 290, 605, 651, 1047
DpnII GATC 5 cut(s) 154, 288, 603, 649, 1045
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 3 cut(s) 693, 907, 1161
EarI CTCTTC 3 cut(s) 693, 907, 1161
Eco130I CCWWGG 3 cut(s) 599, 688, 1071
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 303, 733
EcoT14I CCWWGG 3 cut(s) 599, 688, 1071
ErhI CCWWGG 3 cut(s) 599, 688, 1071
FaeI CATG 6 cut(s) 133, 619, 828, 860, 958, 1179
FaqI GGGAC 2 cut(s) 182, 1155
FatI CATG 6 cut(s) 129, 615, 824, 856, 954, 1175
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 1009, 1128
FokI GGATG 3 cut(s) 127, 542, 644
Fsp4HI GCNGC 2 cut(s) 1009, 1128
FspBI CTAG 4 cut(s) 122, 740, 810, 944
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 1009, 1128
GsaI CCCAGC 1 cut(s) 1015
HaeIII GGCC 4 cut(s) 51, 308, 620, 738
HapII CCGG 3 cut(s) 242, 271, 629
HhaI GCGC 1 cut(s) 25
Hin1II CATG 6 cut(s) 133, 619, 828, 860, 958, 1179
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 9 cut(s) 82, 267, 368, 693, 821, 842, 853, 915, 1028
HpaII CCGG 3 cut(s) 242, 271, 629
HphI GGTGA 3 cut(s) 369, 377, 884
Hpy188I TCNGA 4 cut(s) 45, 319, 884, 897
Hpy188III TCNNGA 9 cut(s) 11, 104, 196, 219, 271, 292, 478, 857, 983
HpyAV CCTTC 4 cut(s) 55, 289, 737, 958
HpyCH4III ACNGT 2 cut(s) 90, 905
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 7 cut(s) 152, 207, 413, 422, 615, 769, 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 419, 522
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 6 cut(s) 133, 619, 828, 860, 958, 1179
HspAI GCGC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 270
KpnI GGTACC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 5 cut(s) 154, 288, 603, 649, 1045
LguI GCTCTTC 1 cut(s) 1161
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 995, 1114
LweI GCATC 5 cut(s) 81, 201, 335, 409, 796
MaeI CTAG 4 cut(s) 122, 740, 810, 944
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 3 cut(s) 872, 922, 1050
MalI GATC 5 cut(s) 156, 290, 605, 651, 1047
MboI GATC 5 cut(s) 154, 288, 603, 649, 1045
MboII GAAGA 9 cut(s) 362, 647, 710, 924, 950, 1055, 1109, 1175, 1178
MfeI CAATTG 2 cut(s) 663, 770
MflI RGATCY 4 cut(s) 154, 603, 649, 1045
MhlI GDGCHC 1 cut(s) 760
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 7 cut(s) 98, 115, 252, 663, 770, 792, 1088
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 5 cut(s) 702, 815, 847, 924, 1022
MmeI TCCRAC 2 cut(s) 819, 975
Mox20I TGGCCA 1 cut(s) 620
MroI TCCGGA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 620
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 620
MspI CCGG 3 cut(s) 242, 271, 629
MspR9I CCNGG 4 cut(s) 242, 305, 629, 735
MunI CAATTG 2 cut(s) 663, 770
MvaI CCWGG 2 cut(s) 305, 735
MwoI GCNNNNNNNGC 3 cut(s) 181, 419, 522
NciI CCSGG 2 cut(s) 242, 629
NdeII GATC 5 cut(s) 154, 288, 603, 649, 1045
NlaIII CATG 6 cut(s) 133, 619, 828, 860, 958, 1179
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 872
PaeR7I CTCGAG 1 cut(s) 333
PagI TCATGA 1 cut(s) 856
PciSI GCTCTTC 1 cut(s) 1161
PfeI GAWTC 4 cut(s) 82, 267, 368, 842
PkrI GCNGC 2 cut(s) 1010, 1129
PleI GAGTC 5 cut(s) 701, 815, 847, 923, 1022
PpsI GAGTC 5 cut(s) 701, 815, 847, 923, 1022
Psp6I CCWGG 2 cut(s) 303, 733
PspFI CCCAGC 1 cut(s) 1011
PspGI CCWGG 2 cut(s) 303, 733
PspN4I GGNNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 333
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 4 cut(s) 154, 603, 649, 1045
RsaI GTAC 5 cut(s) 92, 346, 686, 975, 1174
RsaNI GTAC 5 cut(s) 91, 345, 685, 974, 1173
RseI CAYNNNNRTG 1 cut(s) 630
SapI GCTCTTC 1 cut(s) 1161
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 2 cut(s) 1009, 1128
Sau3AI GATC 5 cut(s) 154, 288, 603, 649, 1045
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 5 cut(s) 702, 815, 847, 924, 1022
ScrFI CCNGG 4 cut(s) 242, 305, 629, 735
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 5 cut(s) 81, 201, 335, 409, 796
SfcI CTRYAG 2 cut(s) 150, 510
Sfr274I CTCGAG 1 cut(s) 333
SlaI CTCGAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 4 cut(s) 280, 333, 476, 983
SmoI CTYRAG 4 cut(s) 280, 333, 476, 983
Sse9I AATT 7 cut(s) 98, 115, 252, 663, 770, 792, 1088
SsiI CCGC 1 cut(s) 1113
SspMI CTAG 4 cut(s) 122, 740, 810, 944
StyD4I CCNGG 4 cut(s) 240, 303, 627, 733
StyI CCWWGG 3 cut(s) 599, 688, 1071
TaaI ACNGT 2 cut(s) 90, 905
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 334, 696
TaqII GACCGA 1 cut(s) 215
TasI AATT 7 cut(s) 98, 115, 252, 663, 770, 792, 1088
TatI WGTACW 2 cut(s) 344, 973
TfiI GAWTC 4 cut(s) 82, 267, 368, 842
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 2 cut(s) 1008, 1127
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 5 cut(s) 74, 485, 648, 951, 1017
TspGWI ACGGA 1 cut(s) 1110
TspRI CASTG 1 cut(s) 910
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 333
XspI CTAG 4 cut(s) 122, 740, 810, 944
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.