Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

11215112 .. 11216432

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGCCGAGCCATTCAAACACAGGTCAATCAAGATCTGTAGATCGCAAAACGGTTGAGAAAAATAGAAGGATGCAAATGAAGTCTCTCTACTCAGAACTCATCTCTCTTCTTCCTCATCATTCTTCTACGGAGCCTTTAACACTACCTGATCAGCTAGATGAAGCTGCAAACTACATCAAGAAGCTACAAGTGAACGTGGAGAAAAAGAGAGAAAGGAAAAGGAACCTCGTTGCGACTACAACTTTGGAGAAACTGAATTCCGTCGGATCTTCATCGGTTTCGTCGAGCGTCGATGTCTCCGTGCCAAGAAAGCTGCCAAAAATCGAGATTCAAGAAACTGGTTCCATTTTTCACATCTTTCTTGTGACAAGCTTGGAACACAAGTTTATGTTTTGTGAGATCATTCGTGTTCTCACCGAGGAATTAGGAGCTGAGATCACTCATGCTGGATACTCCATTGTTGATGATGCTGTCTTCCACACCCTTCACTGCAAGGTGGAAGAACACGATTATGGAGCTAGGAGTCAAATTCCTGAAAGACTGGAGAAGATTGTGAACAGTGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

190

Amino Acids

21.58

Weight (kDa)

6.8

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	17 - 64	5.9e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	259, 531
AgsI	TTSAA	2 cut(s)	18, 335
AluBI	AGCT	7 cut(s)	157, 167, 187, 316, 375, 434, 521
AluI	AGCT	7 cut(s)	157, 167, 187, 316, 375, 434, 521
Alw26I	GTCTC	2 cut(s)	90, 304
AlwI	GGATC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	167, 316
ApoI	RAATTY	2 cut(s)	259, 531
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AsuHPI	GGTGA	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbsI	GAAGAC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	154, 303
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	90, 304
BfaI	CTAG	2 cut(s)	158, 522
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	2 cut(s)	168, 317
BlsI	GCNGC	2 cut(s)	169, 318
BmiI	GGNNCC	4 cut(s)	6, 135, 227, 346
BmsI	GCATC	2 cut(s)	63, 460
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	346, 549
Bse8I	GATNNNNATC	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	108, 426
BseNI	ACTGG	2 cut(s)	346, 549
BseXI	GCAGC	2 cut(s)	154, 303
BsmAI	GTCTC	2 cut(s)	90, 304
Bsp143I	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
BspCNI	CTCAG	2 cut(s)	107, 427
BspLI	GGNNCC	4 cut(s)	6, 135, 227, 346
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	346, 549
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
Bst4CI	ACNGT	2 cut(s)	55, 563
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	94, 435
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	6 cut(s)	38, 46, 154, 272, 405, 441
BstMAI	GTCTC	2 cut(s)	90, 304
BstMBI	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	154, 303
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	35, 269
BstYI	RGATCY	2 cut(s)	35, 269
BsuI	GTATCC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	490, 568
CseI	GACGC	1 cut(s)	280
CviAII	CATG	1 cut(s)	446
DdeI	CTNAG	2 cut(s)	94, 435
DpnI	GATC	6 cut(s)	37, 45, 153, 271, 404, 440
DpnII	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	449
FaiI	YATR	3 cut(s)	392, 447, 516
FatI	CATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	168, 317
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	168, 317
FspBI	CTAG	2 cut(s)	158, 522
GluI	GCNGC	2 cut(s)	168, 317
GsuI	CTGGAG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	331, 526
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	3 cut(s)	196, 559, 568
Hpy188I	TCNGA	2 cut(s)	97, 269
Hpy188III	TCNNGA	5 cut(s)	33, 181, 328, 335, 536
Hpy8I	GTNNAC	3 cut(s)	196, 559, 568
Hpy99I	CGWCG	3 cut(s)	269, 289, 296
HpyAV	CCTTC	2 cut(s)	63, 497
HpyCH4III	ACNGT	2 cut(s)	55, 563
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	76, 170, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	94, 435
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
LmnI	GCTCC	4 cut(s)	4, 133, 431, 518
LpnPI	CCDG	6 cut(s)	9, 162, 327, 435, 530, 549
Lsp1109I	GCAGC	2 cut(s)	154, 303
LweI	GCATC	2 cut(s)	63, 460
MaeI	CTAG	2 cut(s)	158, 522
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	6 cut(s)	37, 45, 153, 271, 404, 440
MboI	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
MboII	GAAGA	7 cut(s)	101, 104, 117, 264, 469, 515, 562
MflI	RGATCY	2 cut(s)	35, 269
MluCI	AATT	3 cut(s)	259, 425, 531
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	126, 239, 415
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	4 cut(s)	6, 135, 227, 346
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	284, 300
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	169, 318
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	6, 135, 227, 346
PsuI	RGATCY	2 cut(s)	35, 269
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	168, 317
Sau3AI	GATC	6 cut(s)	35, 43, 151, 269, 402, 438
SchI	GAGTC	1 cut(s)	535
SfaNI	GCATC	2 cut(s)	63, 460
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	259, 425, 531
SspMI	CTAG	2 cut(s)	158, 522
TaaI	ACNGT	2 cut(s)	55, 563
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	287, 294, 327
TasI	AATT	3 cut(s)	259, 425, 531
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	497, 568
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	167, 316
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	95, 177, 264
TspGWI	ACGGA	3 cut(s)	146, 253, 292
TspRI	CASTG	2 cut(s)	497, 568
XapI	RAATTY	2 cut(s)	259, 531
XspI	CTAG	2 cut(s)	158, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.