Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

2320304 .. 2322686

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G048500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGCAGTGCCCTAGTTCATCAAGAGCTGATAGGAAAACCATAGAGAAAAATAGGAGGAATCAAATGAAAGCCCTATACTCCAAGCTCAATTCTCTTGTTCCCCATCAACGTTCAAGGGAAGTGACATCGCTACCGGATCAGCTAGATGATGCTGTGAACTACATCAAAAAGCAACAGACGAACTTGGAGAAAATGAGGGAGAAGAAAGAGTACCTAATGGGAACTGAGAAGAGTGGAAATAATAATGCAGGGTTTGTTGGTGGTGAAGTAATAGGGGGCTTAAAATCACCACAGATTGAGATTGAGATTCAAGAAATGGGTTCAGCTCTACAGGTTGTTCTGATAACTGGGCTGGATTATCAGTTCATGTTTAATGAATCAATTCGCGTGCTTCATGAAGAGGGAGCCGACATTGTGAACGCCAGTTTTTCAATTGTTGAAGATACCATTTTCCACACAATACATTCCAAGATTGGAGAGTCTGCACCAGGCCCCGTCGCAGCAAGGATATCAGAGAGACTGAAAAAGCTTGTAAACGGTAGAGCTGGTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

187

Amino Acids

20.75

Weight (kDa)

7.84

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AclI	AACGTT	1 cut(s)	112
AclWI	GGATC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	117, 314, 435, 443
AjnI	CCWGG	1 cut(s)	490
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	6 cut(s)	29, 88, 145, 329, 532, 548
AluI	AGCT	6 cut(s)	29, 88, 145, 329, 532, 548
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	278, 282
BaeGI	GKGCMC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	2 cut(s)	15, 146
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	409, 496
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	355, 426
BseBI	CCWGG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	355, 426
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	409, 496
BspPI	GGATC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	355, 426
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	2 cut(s)	227, 396
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	332
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	370, 398
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	227, 396
EarI	CTCTTC	2 cut(s)	227, 396
Eco32I	GATATC	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	513
FaeI	CATG	2 cut(s)	373, 401
FaiI	YATR	4 cut(s)	44, 79, 371, 399
FatI	CATG	2 cut(s)	369, 397
Fnu4HI	GCNGC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	15, 146
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	373, 401
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	61, 310, 380, 482
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	278, 282
Hpy166II	GTNNAC	3 cut(s)	160, 421, 538
Hpy188I	TCNGA	2 cut(s)	345, 517
Hpy188III	TCNNGA	3 cut(s)	24, 314, 398
Hpy8I	GTNNAC	3 cut(s)	160, 421, 538
Hpy99I	CGWCG	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	251, 488
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	373, 401
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	4, 407
LpnPI	CCDG	9 cut(s)	150, 237, 320, 336, 341, 439, 477, 504, 534
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	15, 146
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	217, 244, 413, 455
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	91, 384, 435
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	3 cut(s)	51, 192, 397
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	284, 375
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	390
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	373, 401
NlaIV	GGNNCC	2 cut(s)	409, 496
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	61, 310, 380
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp1406I	AACGTT	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	409, 496
PspPI	GGNCC	1 cut(s)	494
PsrI	GAACNNNNNNTAC	1 cut(s)	535
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	284, 375
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	9 cut(s)	31, 90, 115, 147, 219, 331, 339, 534, 550
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	91, 384, 435
SspMI	CTAG	2 cut(s)	15, 146
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	115
TasI	AATT	3 cut(s)	91, 384, 435
TfiI	GAWTC	3 cut(s)	61, 310, 380
Tru1I	TTAA	2 cut(s)	284, 375
Tru9I	TTAA	2 cut(s)	284, 375
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	7 cut(s)	9, 83, 358, 386, 393, 414, 543
TspRI	CASTG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	15, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.