Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408735.1

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

92 .. 573

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgagggagaagaaagacagccaaatgggagtagagcggatcaccattaacaataatggaggttcacgtaggggactaaatggtggcgggttaagattacctcagatcgagattcgtgaaatgggttctgttctagatgttgttctgataactggattggattttcaattcatgtttgaggggtcgattcgtatgcttcttgaagagggagctgacattgtaaatgccagtttctcagttgttgaagataccattttccacaccatacattctaagatcggcgagtctgcaccaggcccggtagctgcaaggatatccgacagactaagaaagtttgtgaacgaagctagtactactgcattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

121

Amino Acids

13.27

Weight (kDa)

5.68

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	2 cut(s)	37, 87
AclWI	GGATC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	167, 203, 245
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	212, 305, 347
AluI	AGCT	3 cut(s)	212, 305, 347
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	299
BfaI	CTAG	2 cut(s)	134, 348
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	294, 299
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	294, 299
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	157, 228
BseBI	CCWGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	116, 249
BseNI	ACTGG	2 cut(s)	157, 228
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	39, 105, 276
BspACI	CCGC	2 cut(s)	37, 87
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	115, 248
BspPI	GGATC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	157, 228
BssMI	GATC	3 cut(s)	39, 105, 276
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	68
BstDEI	CTNAG	4 cut(s)	102, 235, 273, 326
BstKTI	GATC	3 cut(s)	42, 108, 279
BstMBI	GATC	3 cut(s)	39, 105, 276
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	292, 297
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	5 cut(s)	21, 212, 297, 305, 347
CviKI_1	RGCY	5 cut(s)	21, 212, 297, 305, 347
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	102, 235, 273, 326
DpnI	GATC	3 cut(s)	41, 107, 278
DpnII	GATC	3 cut(s)	39, 105, 276
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 194, 266
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	134, 348
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	3 cut(s)	112, 187, 284
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	65, 340
Hpy188I	TCNGA	3 cut(s)	105, 147, 319
Hpy188III	TCNNGA	4 cut(s)	109, 116, 134, 200
Hpy8I	GTNNAC	2 cut(s)	65, 340
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	290, 308, 359
HpyF3I	CTNAG	4 cut(s)	102, 235, 273, 326
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	39, 105, 276
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	138, 241, 279, 306, 312
Lsp1109I	GCAGC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	134, 348
MaeII	ACGT	1 cut(s)	67
MalI	GATC	3 cut(s)	41, 107, 278
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	39, 105, 276
MboII	GAAGA	3 cut(s)	22, 215, 257
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	53, 111, 172, 199
MseI	TTAA	2 cut(s)	48, 92
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	294, 299
MvaI	CCWGG	1 cut(s)	294
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	39, 105, 276
NlaIII	CATG	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	112, 187
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	48, 92
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	39, 105, 276
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	294, 299
SetI	ASST	6 cut(s)	64, 70, 103, 214, 307, 349
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	37, 87
SspMI	CTAG	2 cut(s)	134, 348
StyD4I	CCNGG	2 cut(s)	292, 297
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	108, 185
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	112, 187
Tru1I	TTAA	2 cut(s)	48, 92
Tru9I	TTAA	2 cut(s)	48, 92
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 348
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.