Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

5524392 .. 5525310

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATGAATAGGCAGTACAGTACATCTAGAACTGACCGCAAAACCATTGAGAAAAACAGGAGGGAACAAATGAAAGCCCTATTCTCCAAGCTCAAGTCTCTTCTACCCCATCAAAGTTCCAGGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGATCAACTTGGAGAAAATGAGAGAGAAGAAAGACAGCCTAGTGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACTGATGGAGGAGAGTCGATTCGCGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGATAGGCGAGTCTGCACCTACCACAGTAGTTGCAAGGGTATCTGAGAGACTAGGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

9.73

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	10 - 61	7.5e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	460
AfaI	GTAC	3 cut(s)	17, 22, 460
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	91, 233, 320
AluI	AGCT	3 cut(s)	91, 233, 320
Alw26I	GTCTC	2 cut(s)	102, 424
AlwI	GGATC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	117, 275
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	102, 424
BfaI	CTAG	5 cut(s)	27, 149, 221, 434, 456
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	140, 346
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	357, 417
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	300, 326
BseXI	GCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	102, 424
Bsp143I	GATC	3 cut(s)	183, 237, 452
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	356, 418
BspFNI	CGCG	1 cut(s)	300
BspPI	GGATC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	183, 237, 452
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	20, 409
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	259, 302
BstDEI	CTNAG	4 cut(s)	234, 343, 381, 426
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	186, 240, 455
BstMAI	GTCTC	2 cut(s)	102, 424
BstMBI	GATC	3 cut(s)	183, 237, 452
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	259, 302
Csp6I	GTAC	3 cut(s)	16, 21, 459
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviJI	RGCY	7 cut(s)	77, 91, 158, 219, 233, 261, 320
CviKI_1	RGCY	7 cut(s)	77, 91, 158, 219, 233, 261, 320
CviQI	GTAC	3 cut(s)	16, 21, 459
DdeI	CTNAG	4 cut(s)	234, 343, 381, 426
DpnI	GATC	3 cut(s)	185, 239, 454
DpnII	GATC	3 cut(s)	183, 237, 452
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	5 cut(s)	27, 149, 221, 434, 456
GluI	GCNGC	1 cut(s)	137
HapII	CCGG	1 cut(s)	140
HinfI	GANTC	3 cut(s)	290, 295, 392
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	27, 172
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	20, 409
HpyCH4V	TGCA	5 cut(s)	181, 257, 398, 416, 467
HpyF3I	CTNAG	4 cut(s)	234, 343, 381, 426
Kzo9I	GATC	3 cut(s)	183, 237, 452
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	43, 106, 133, 153, 243, 349
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	140, 346
MaeI	CTAG	5 cut(s)	27, 149, 221, 434, 456
MalI	GATC	3 cut(s)	185, 239, 454
MboI	GATC	3 cut(s)	183, 237, 452
MboII	GAAGA	3 cut(s)	92, 220, 365
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	299, 401
MnlI	CCTC	4 cut(s)	54, 278, 304, 307
MseI	TTAA	3 cut(s)	243, 306, 330
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	300
NdeII	GATC	3 cut(s)	183, 237, 452
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	2 cut(s)	298, 400
PpsI	GAGTC	2 cut(s)	298, 400
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	3 cut(s)	17, 22, 460
RsaNI	GTAC	3 cut(s)	16, 21, 459
SaqAI	TTAA	3 cut(s)	243, 306, 330
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	3 cut(s)	183, 237, 452
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	2 cut(s)	299, 401
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	4 cut(s)	93, 235, 322, 403
SfaNI	GCATC	2 cut(s)	140, 346
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	5 cut(s)	27, 149, 221, 434, 456
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	20, 409
TaqI	TCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	163
TatI	WGTACW	3 cut(s)	15, 20, 458
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	243, 306, 330
Tru9I	TTAA	3 cut(s)	243, 306, 330
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	20, 86, 159
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	5 cut(s)	27, 149, 221, 434, 456
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.