Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

26367770 .. 26368321

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGATTATTGTTGCAGGAAGCGTCGCTGCCGGATCAACTAGATGATGCTGTAAACTACATTAAAAAATTACGGACAAACTTGGAGAAGTTGAGGGAGAAGAAAGACAGGCTAATGGGAATCGAGAAGAGCAGTCATTGTAATGCAGGGTTTGGCCGCAGTGGTGGAGCAATAACCGAGGGATTAAATTCATCACCATTGGTTGAGATTCATGAAATGGGTTCAGCTCTAGAGGTTCTGATGATAACCGGGCTGGATTACCAGTTCATGTTCAATGAGTCGATTCGAGTGCTTCAAGAAGAGGGAGCCGACATTGTTAATGCCAGTTTCTCAGTTGTCGAAGATACTATTTTTCACACAATACATTCCAAGGTTAGAGAGTCTGCAGCACCAGGCTCAGTAGCTGCAAGGATATCGAAGAGACTAAAAAAGTTTGTGAACGATCAAGATGGTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

154

Amino Acids

16.85

Weight (kDa)

5.58

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	274, 296
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	2 cut(s)	227, 404
AluI	AGCT	2 cut(s)	227, 404
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	28, 386, 404
ApoI	RAATTY	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	15, 391, 398
BccI	CCATC	1 cut(s)	443
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 396, 430
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	2 cut(s)	41, 230
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	4 cut(s)	29, 157, 387, 405
BlsI	GCNGC	4 cut(s)	30, 158, 388, 406
Bme1390I	CCNGG	2 cut(s)	250, 393
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	250, 393
BmsI	GCATC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	177, 369
Bse1I	ACTGG	2 cut(s)	262, 324
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	177, 369
BseMII	CTCAG	2 cut(s)	345, 411
BseNI	ACTGG	2 cut(s)	262, 324
BseXI	GCAGC	3 cut(s)	15, 391, 398
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	32, 249
BsmAI	GTCTC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	34, 442
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	344, 410
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	262, 324
BssECI	CCNNGG	2 cut(s)	177, 369
BssMI	GATC	2 cut(s)	34, 442
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	122, 294, 413
BstDEI	CTNAG	2 cut(s)	331, 397
BstKTI	GATC	2 cut(s)	37, 445
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	34, 442
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	248, 391
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	15, 391, 398
BsuRI	GGCC	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	211
CseI	GACGC	1 cut(s)	12
CviAII	CATG	2 cut(s)	212, 268
CviJI	RGCY	7 cut(s)	112, 156, 227, 253, 308, 396, 404
CviKI_1	RGCY	7 cut(s)	112, 156, 227, 253, 308, 396, 404
DdeI	CTNAG	2 cut(s)	331, 397
DpnI	GATC	2 cut(s)	36, 444
DpnII	GATC	2 cut(s)	34, 442
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	122, 294, 413
EarI	CTCTTC	3 cut(s)	122, 294, 413
Eco130I	CCWWGG	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	391
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	215, 271
FaiI	YATR	2 cut(s)	213, 269
FatI	CATG	2 cut(s)	211, 267
Fnu4HI	GCNGC	4 cut(s)	29, 157, 387, 405
Fsp4HI	GCNGC	4 cut(s)	29, 157, 387, 405
FspBI	CTAG	2 cut(s)	41, 230
GluI	GCNGC	4 cut(s)	29, 157, 387, 405
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	32, 249
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	215, 271
HinfI	GANTC	5 cut(s)	120, 208, 278, 283, 380
HpaII	CCGG	2 cut(s)	32, 249
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	55, 439
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	5 cut(s)	124, 212, 230, 296, 446
Hpy8I	GTNNAC	2 cut(s)	55, 439
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	16, 146, 386, 407, 455
HpyF3I	CTNAG	2 cut(s)	331, 397
Hsp92II	CATG	2 cut(s)	215, 271
Kzo9I	GATC	2 cut(s)	34, 442
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	167, 305
Lsp1109I	GCAGC	3 cut(s)	15, 391, 398
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	41, 230
MalI	GATC	2 cut(s)	36, 444
MboI	GATC	2 cut(s)	34, 442
MboII	GAAGA	5 cut(s)	112, 139, 311, 353, 430
MluCI	AATT	2 cut(s)	68, 187
MlyI	GAGTC	2 cut(s)	287, 389
MnlI	CCTC	4 cut(s)	87, 172, 226, 295
MseI	TTAA	3 cut(s)	63, 185, 318
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	2 cut(s)	32, 249
MspR9I	CCNGG	2 cut(s)	250, 393
MvaI	CCWGG	1 cut(s)	393
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	34, 442
NlaIII	CATG	2 cut(s)	215, 271
NlaIV	GGNNCC	1 cut(s)	307
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	120, 208, 283
PkrI	GCNGC	4 cut(s)	30, 158, 388, 406
PleI	GAGTC	2 cut(s)	286, 388
PpsI	GAGTC	2 cut(s)	286, 388
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	63, 185, 318
SatI	GCNGC	4 cut(s)	29, 157, 387, 405
Sau3AI	GATC	2 cut(s)	34, 442
SchI	GAGTC	2 cut(s)	287, 389
ScrFI	CCNGG	2 cut(s)	250, 393
SetI	ASST	4 cut(s)	229, 237, 375, 406
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	68, 187
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	2 cut(s)	41, 230
StyD4I	CCNGG	2 cut(s)	248, 391
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	5 cut(s)	123, 281, 286, 339, 416
TasI	AATT	2 cut(s)	68, 187
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	120, 208, 283
Tru1I	TTAA	3 cut(s)	63, 185, 318
Tru9I	TTAA	3 cut(s)	63, 185, 318
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	3 cut(s)	28, 386, 404
TspDTI	ATGAA	4 cut(s)	180, 200, 228, 256
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	229
XspI	CTAG	2 cut(s)	41, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.