Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

5388022 .. 5388872

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAAGCCCTATTCTCCAAGCTCAAGTCTCTTCTACCCCATCAAAGTTCGAGGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGATCAACTTGGAGAAAATGAGAGAGAAGAAAGACAGCCTAATGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACTGATGGAGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGCGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCATCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGATAGGCGAGTCTGCACCTACCACAGTAGCTGCAAGGGTATCTGAGAGACTAAGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

165

Amino Acids

18.25

Weight (kDa)

9.44

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AclWI	GGATC	1 cut(s)	484
AfaI	GTAC	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	5 cut(s)	22, 164, 260, 341, 437
AluI	AGCT	5 cut(s)	22, 164, 260, 341, 437
Alw26I	GTCTC	2 cut(s)	33, 448
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	67, 437
AsuHPI	GGTGA	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	54, 424
BccI	CCATC	2 cut(s)	48, 206
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BcoDI	GTCTC	2 cut(s)	33, 448
BfaI	CTAG	3 cut(s)	80, 282, 480
BisI	GCNGC	2 cut(s)	68, 438
BlsI	GCNGC	2 cut(s)	69, 439
BmcAI	AGTACT	1 cut(s)	484
BmsI	GCATC	2 cut(s)	71, 370
BpuEI	CTTGAG	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	54, 424
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	33, 448
Bsp143I	GATC	4 cut(s)	114, 168, 234, 476
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	114, 168, 234, 476
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	190, 323
BstDEI	CTNAG	4 cut(s)	165, 405, 450, 458
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	4 cut(s)	117, 171, 237, 479
BstMAI	GTCTC	2 cut(s)	33, 448
BstMBI	GATC	4 cut(s)	114, 168, 234, 476
BstNSI	RCATGY	1 cut(s)	269
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	54, 424
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	190, 323
CaiI	CAGNNNCTG	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	266, 301
CviJI	RGCY	9 cut(s)	8, 22, 89, 150, 164, 192, 260, 341, 437
CviKI_1	RGCY	9 cut(s)	8, 22, 89, 150, 164, 192, 260, 341, 437
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	4 cut(s)	165, 405, 450, 458
DpnI	GATC	4 cut(s)	116, 170, 236, 478
DpnII	GATC	4 cut(s)	114, 168, 234, 476
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	269, 304
FaiI	YATR	3 cut(s)	267, 302, 395
FatI	CATG	2 cut(s)	265, 300
Fnu4HI	GCNGC	2 cut(s)	68, 438
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	68, 438
FspBI	CTAG	3 cut(s)	80, 282, 480
GluI	GCNGC	2 cut(s)	68, 438
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	2 cut(s)	269, 304
HinfI	GANTC	4 cut(s)	241, 311, 316, 416
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	276, 451
Hpy188III	TCNNGA	3 cut(s)	103, 238, 245
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	112, 188, 422, 440, 491
HpyF3I	CTNAG	4 cut(s)	165, 405, 450, 458
Hsp92II	CATG	2 cut(s)	269, 304
Kzo9I	GATC	4 cut(s)	114, 168, 234, 476
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	3 cut(s)	84, 174, 370
Lsp1109I	GCAGC	2 cut(s)	54, 424
LweI	GCATC	2 cut(s)	71, 370
MaeI	CTAG	3 cut(s)	80, 282, 480
MalI	GATC	4 cut(s)	116, 170, 236, 478
MboI	GATC	4 cut(s)	114, 168, 234, 476
MboII	GAAGA	3 cut(s)	23, 151, 389
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	3 cut(s)	94, 248, 296
MlyI	GAGTC	2 cut(s)	320, 425
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	45, 209, 325, 328
MseI	TTAA	4 cut(s)	174, 221, 327, 351
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	321
NdeII	GATC	4 cut(s)	114, 168, 234, 476
NlaIII	CATG	2 cut(s)	269, 304
NspI	RCATGY	1 cut(s)	269
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	241, 316
PkrI	GCNGC	2 cut(s)	69, 439
PleI	GAGTC	2 cut(s)	319, 424
PpsI	GAGTC	2 cut(s)	319, 424
PscI	ACATGT	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	174, 221, 327, 351
SatI	GCNGC	2 cut(s)	68, 438
Sau3AI	GATC	4 cut(s)	114, 168, 234, 476
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	2 cut(s)	320, 425
SetI	ASST	7 cut(s)	24, 166, 262, 287, 343, 427, 439
SfaNI	GCATC	2 cut(s)	71, 370
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	94, 248, 296
SspMI	CTAG	3 cut(s)	80, 282, 480
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	3 cut(s)	50, 237, 314
TasI	AATT	3 cut(s)	94, 248, 296
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	241, 316
Tru1I	TTAA	4 cut(s)	174, 221, 327, 351
Tru9I	TTAA	4 cut(s)	174, 221, 327, 351
TseI	GCWGC	2 cut(s)	67, 437
TspDTI	ATGAA	3 cut(s)	17, 90, 289
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	3 cut(s)	80, 282, 480
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.