Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

59463455 .. 59468486

Gene Structure 5032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0437200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGACTTCGTCTGTACAGAGCAAAGCGCCTGAACAAGGAATGAAGTGGGCATTTTCGGCTGGCACGAATTTGTTGTCAGGTCTTGGTGCAAAGATTGAGAGAGAGTCCAAGCTGAAGCTCAATGATTTCGCCAAGGAACTTAGGTCATTCAGTAGTGTGGATTTGTCAGGGCGTAACTTTGGAGATGAAGGATTATTTTTCCTTTCTGAGAGTCTGGGTTACAATCAGACTGCTGAAGAAGTAAGTTTTGCTGCAAACGGAATAACTGCTACTGGAATAAAAGCCTTTGATGGTGTTCTTCAATCTAACATCATGTTGAAGACTCTTAATCTCTCTGGGAATGCTATTGGAGATGATGGAGTAAAGTGCCTCTGTGATATATTGGCGAACAATAATGGCATTCAAAAGCTGCAGCTAAACAGTACTGACGTAGGGGATGAGGGTGCAAAGGCTATTGCAGAATTGTTGAAGGCAAATTCAAGCTTGCGTGTTCTTGAGCTTAACAACAATATGATTGACTACTCTGGATTTACAAGTCTTGCTGGGGCCCTTCTTGAGAACAATACAATACGGAACTTGCATTTAAATGGCAACTATGGTGGAGCCTTGGGCGCCAATGCTTTAGCTAAAGGACTTGAGGGGAACAAGTCTTTAAGGGAACTTCATTTACACGGAAATTCTATTGGAGATGAAGGAGTCAATGCTTTGATGTCAGGTTTAGCCTTACATAAAGGTAAACTGACTCTTTTAGACATTGGCAACAACTCAATTAGTGCAAAAGGTGCTTTTCATGTTGGTGGATATATCAAAAAGACAAAGAGCTTGCTATGGTTGAACCTTTACATGAATGACATAGGGGATGAGGGAGCTGGACACATTGCAGATGCTTTGAAGCAAAACCGGACAATAACAACCATAGACTTGGGGGGAAATAACATCCATGCCGAGGGAGTGACTGCATTAGCTGAAGCGTTGAAAGATAATTCTGTTATTACATTTTTGGAAGTTGGTTATAATCCCATTGGACCAGATGGAGTGAAGGCTTTATCTGAAGTTCTCAAGTTTAATGGAAACATAGAAACCCTTAAGCTCGGCTGGTGCCAGATAGGAGCAAAGGGTGCCGAGTTCATTGCAGATATGTTGAAATATAATACTACTATACGTGTTCTGGACTTACGGGCAAATGGACTACGCAATGAAGGTGCATCCTGCCTGGCTCGCAGTTTAAAAGTGGTTAATGAAGCTTTAACTTCATTAGATTTAGGGTTCAATGAAATTAGGGATGACGGGGCGTTTGCAATTTCTCAAGCCCTAAAGGCTAATGAAGATGTGACAGTCTCATCTCTGAACCTTTCAAGTAACTTCCTCACCAAATTTGGGCAGAGTGCTTTGACAGATGCAAGAGACCATGTGTATGAGATGAGTGAAAAGGAAATCAACATATTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

483

Amino Acids

51.47

Weight (kDa)

5.35

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_6	PF13516	103 - 125	2.5e-06	Leucine Rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AccB1I	GGYRCC	3 cut(s)	611, 1098, 1118
AcsI	RAATTY	4 cut(s)	67, 475, 676, 1373
AcuI	CTGAAG	4 cut(s)	134, 255, 987, 1071
AcyI	GRCGYC	1 cut(s)	612
AfaI	GTAC	2 cut(s)	15, 424
AfiI	CCNNNNNNNGG	3 cut(s)	35, 946, 1377
AflII	CTTAAG	1 cut(s)	1085
AflIII	ACRYGT	1 cut(s)	1162
AjnI	CCWGG	1 cut(s)	1212
Alw26I	GTCTC	2 cut(s)	1342, 1398
AoxI	GGCC	1 cut(s)	546
ApaI	GGGCCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	251, 409, 412
ApoI	RAATTY	4 cut(s)	67, 475, 676, 1373
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 91, 1277, 1309
AspLEI	GCGC	2 cut(s)	28, 614
AspS9I	GGNCC	3 cut(s)	546, 547, 1025
AsuHPI	GGTGA	1 cut(s)	1360
AvaII	GGWCC	1 cut(s)	1025
BaeGI	GKGCMC	1 cut(s)	550
BanI	GGYRCC	3 cut(s)	611, 1098, 1118
BanII	GRGCYC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	238, 396, 424
BccI	CCATC	3 cut(s)	284, 350, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	1112, 1146
BciT130I	CCWGG	1 cut(s)	1214
BcoDI	GTCTC	2 cut(s)	1342, 1398
BfaI	CTAG	1 cut(s)	1450
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	2 cut(s)	29, 615
BfrI	CTTAAG	1 cut(s)	1085
BglI	GCCNNNNNGGC	1 cut(s)	1316
BisI	GCNGC	3 cut(s)	252, 410, 413
BlsI	GCNGC	3 cut(s)	253, 411, 414
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	1214
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	3 cut(s)	546, 547, 1025
BmiI	GGNNCC	6 cut(s)	547, 548, 604, 613, 1100, 1120
BmrFI	CCNGG	1 cut(s)	1214
BmsI	GCATC	3 cut(s)	874, 1214, 1387
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	5 cut(s)	515, 575, 656, 1043, 1290
BsaAI	YACGTR	1 cut(s)	1163
BsaHI	GRCGYC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	1398
BsaJI	CCNNGG	3 cut(s)	132, 606, 945
BsaWI	WCCGGW	1 cut(s)	900
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 946, 1377
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	3 cut(s)	876, 1128, 1201
BseBI	CCWGG	1 cut(s)	1214
BseDI	CCNNGG	3 cut(s)	132, 606, 945
BseGI	GGATG	5 cut(s)	442, 865, 936, 1205, 1288
BseLI	CCNNNNNNNGG	3 cut(s)	35, 946, 1377
BseMI	GCAATG	3 cut(s)	876, 1128, 1201
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	238, 396, 424
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	3 cut(s)	611, 1098, 1118
BsiSI	CCGG	1 cut(s)	901
BslI	CCNNNNNNNGG	3 cut(s)	35, 946, 1377
BsmAI	GTCTC	2 cut(s)	1342, 1398
BsmI	GAATGC	2 cut(s)	346, 399
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	1398
Bsp120I	GGGCCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	13
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	6 cut(s)	547, 548, 604, 613, 1100, 1120
BspMAI	CTGCAG	1 cut(s)	414
BspT107I	GGYRCC	3 cut(s)	611, 1098, 1118
BspTI	CTTAAG	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	1398
BsrDI	GCAATG	3 cut(s)	876, 1128, 1201
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	132, 606, 945
BssNI	GRCGYC	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	132, 606
Bst2UI	CCWGG	1 cut(s)	1214
Bst4CI	ACNGT	2 cut(s)	422, 1336
BstACI	GRCGYC	1 cut(s)	612
BstAFI	CTTAAG	1 cut(s)	1085
BstAPI	GCANNNNNTGC	2 cut(s)	782, 1118
BstAUI	TGTACA	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	1163
BstC8I	GCNNGC	4 cut(s)	61, 485, 824, 1219
BstDEI	CTNAG	2 cut(s)	140, 207
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	5 cut(s)	442, 865, 936, 1205, 1288
BstH2I	RGCGCY	2 cut(s)	29, 615
BstHHI	GCGC	2 cut(s)	28, 614
BstMAI	GTCTC	2 cut(s)	1342, 1398
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 611, 782, 1118, 1218, 1316
BstNI	CCWGG	1 cut(s)	1214
BstSCI	CCNGG	1 cut(s)	1212
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	238, 396, 424
BstV2I	GAAGAC	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	922
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	5 cut(s)	442, 865, 936, 1205, 1288
Cac8I	GCNNGC	4 cut(s)	61, 485, 824, 1219
CfoI	GCGC	2 cut(s)	28, 614
Cfr13I	GGNCC	3 cut(s)	546, 547, 1025
Csp6I	GTAC	2 cut(s)	14, 423
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	5 cut(s)	313, 791, 844, 941, 1409
CviQI	GTAC	2 cut(s)	14, 423
DdeI	CTNAG	2 cut(s)	140, 207
DinI	GGCGCC	1 cut(s)	613
DraI	TTTAAA	2 cut(s)	585, 1227
Eco130I	CCWWGG	2 cut(s)	132, 606
Eco24I	GRGCYC	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	1398
Eco47I	GGWCC	1 cut(s)	1025
Eco57I	CTGAAG	4 cut(s)	134, 255, 987, 1071
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	2 cut(s)	546, 547
EcoRII	CCWGG	1 cut(s)	1212
EcoT14I	CCWWGG	2 cut(s)	132, 606
EcoT38I	GRGCYC	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	613
EheI	GGCGCC	1 cut(s)	613
ErhI	CCWWGG	2 cut(s)	132, 606
FaeI	CATG	5 cut(s)	316, 794, 847, 944, 1412
FatI	CATG	5 cut(s)	312, 790, 843, 940, 1408
Fnu4HI	GCNGC	3 cut(s)	252, 410, 413
FokI	GGATG	5 cut(s)	449, 872, 923, 1192, 1295
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	252, 410, 413
FspBI	CTAG	1 cut(s)	1450
GlaI	GCGC	2 cut(s)	27, 613
GluI	GCNGC	3 cut(s)	252, 410, 413
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	2 cut(s)	29, 615
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	901
HhaI	GCGC	2 cut(s)	28, 614
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	5 cut(s)	316, 794, 847, 944, 1412
Hin6I	GCGC	2 cut(s)	26, 612
HinP1I	GCGC	2 cut(s)	26, 612
HindIII	AAGCTT	2 cut(s)	481, 1242
HinfI	GANTC	5 cut(s)	104, 211, 322, 696, 742
HpaII	CCGG	1 cut(s)	901
HphI	GGTGA	1 cut(s)	1360
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	4 cut(s)	208, 228, 1051, 1347
Hpy188III	TCNNGA	4 cut(s)	494, 525, 554, 1169
Hpy8I	GTNNAC	1 cut(s)	737
HpyAV	CCTTC	6 cut(s)	182, 463, 560, 686, 1033, 1193
HpyCH4III	ACNGT	2 cut(s)	422, 1336
HpyCH4IV	ACGT	2 cut(s)	429, 1162
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 611, 782, 1118, 1218, 1316
HpyF3I	CTNAG	2 cut(s)	140, 207
HpySE526I	ACGT	2 cut(s)	429, 1162
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	316, 794, 847, 944, 1412
HspAI	GCGC	2 cut(s)	26, 612
KasI	GGCGCC	1 cut(s)	611
LmnI	GCTCC	3 cut(s)	602, 866, 1109
Lsp1109I	GCAGC	3 cut(s)	238, 396, 424
LweI	GCATC	3 cut(s)	874, 1214, 1387
MaeI	CTAG	1 cut(s)	1450
MaeII	ACGT	2 cut(s)	429, 1162
MaeIII	GTNAC	5 cut(s)	173, 218, 952, 1330, 1358
MboII	GAAGA	4 cut(s)	248, 290, 331, 1337
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	9 cut(s)	67, 461, 475, 676, 768, 982, 1275, 1299, 1373
Mly113I	GGCGCC	1 cut(s)	612
MlyI	GAGTC	5 cut(s)	113, 220, 316, 705, 736
MnlI	CCTC	6 cut(s)	380, 433, 631, 856, 940, 1376
MseI	TTAA	9 cut(s)	327, 501, 584, 653, 1065, 1086, 1226, 1236, 1247
MslI	CAYNNNNRTG	3 cut(s)	585, 795, 1413
MspCI	CTTAAG	1 cut(s)	1085
MspI	CCGG	1 cut(s)	901
MspR9I	CCNGG	1 cut(s)	1214
Mva1269I	GAATGC	2 cut(s)	346, 399
MvaI	CCWGG	1 cut(s)	1214
MwoI	GCNNNNNNNGC	6 cut(s)	56, 611, 782, 1118, 1218, 1316
NarI	GGCGCC	1 cut(s)	612
NlaIII	CATG	5 cut(s)	316, 794, 847, 944, 1412
NlaIV	GGNNCC	6 cut(s)	547, 548, 604, 613, 1100, 1120
NmeAIII	GCCGAG	3 cut(s)	970, 1071, 1147
NmuCI	GTSAC	2 cut(s)	952, 1330
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	2 cut(s)	346, 399
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	253, 411, 414
PleI	GAGTC	5 cut(s)	112, 219, 316, 704, 736
PluTI	GGCGCC	1 cut(s)	615
PpsI	GAGTC	5 cut(s)	112, 219, 316, 704, 736
Ppu21I	YACGTR	1 cut(s)	1163
PsiI	TTATAA	1 cut(s)	1014
Psp6I	CCWGG	1 cut(s)	1212
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	1212
PspN4I	GGNNCC	6 cut(s)	547, 548, 604, 613, 1100, 1120
PspOMI	GGGCCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	546, 547, 1025
PsrI	GAACNNNNNNTAC	2 cut(s)	651, 683
PstI	CTGCAG	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	15, 424
RsaNI	GTAC	2 cut(s)	14, 423
RseI	CAYNNNNRTG	3 cut(s)	585, 795, 1413
SaqAI	TTAA	9 cut(s)	327, 501, 584, 653, 1065, 1086, 1226, 1236, 1247
SatI	GCNGC	3 cut(s)	252, 410, 413
Sau96I	GGNCC	3 cut(s)	546, 547, 1025
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	5 cut(s)	113, 220, 316, 705, 736
ScrFI	CCNGG	1 cut(s)	1214
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	874, 1214, 1387
SfcI	CTRYAG	1 cut(s)	410
SfoI	GGCGCC	1 cut(s)	613
SinI	GGWCC	1 cut(s)	1025
SmiI	ATTTAAAT	1 cut(s)	585
SmiMI	CAYNNNNRTG	3 cut(s)	585, 795, 1413
SmlI	CTYRAG	6 cut(s)	494, 554, 635, 1058, 1085, 1305
SmoI	CTYRAG	6 cut(s)	494, 554, 635, 1058, 1085, 1305
Sse9I	AATT	9 cut(s)	67, 461, 475, 676, 768, 982, 1275, 1299, 1373
SspDI	GGCGCC	1 cut(s)	611
SspMI	CTAG	1 cut(s)	1450
StyD4I	CCNGG	1 cut(s)	1212
StyI	CCWWGG	2 cut(s)	132, 606
SwaI	ATTTAAAT	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	422, 1336
TaiI	ACGT	2 cut(s)	432, 1165
TasI	AATT	9 cut(s)	67, 461, 475, 676, 768, 982, 1275, 1299, 1373
TatI	WGTACW	2 cut(s)	13, 422
Tru1I	TTAA	9 cut(s)	327, 501, 584, 653, 1065, 1086, 1226, 1236, 1247
Tru9I	TTAA	9 cut(s)	327, 501, 584, 653, 1065, 1086, 1226, 1236, 1247
TseFI	GTSAC	2 cut(s)	952, 1330
TseI	GCWGC	3 cut(s)	251, 409, 412
Tsp45I	GTSAC	2 cut(s)	952, 1330
TspGWI	ACGGA	3 cut(s)	273, 586, 687
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	1085
VpaK11BI	GGWCC	1 cut(s)	1025
XagI	CCTNNNNNAGG	1 cut(s)	33
XapI	RAATTY	4 cut(s)	67, 475, 676, 1373
XspI	CTAG	1 cut(s)	1450
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.