Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

5290483 .. 5291754

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATCAGCAGCAGTACCCTAGTAGTAGTTCATGTAGAGCTGACAGAAAAACCATTGAGAAGAACAGGAGGAATCAGATGAAAGCCCTATACTCCGAGCTCAACTCTCTTCTACCCCATCATCAACACTCAAGGGAAGTGACTTCTTTGCCAGATCAAATAGATGCAGCTGTGAACTATATTAAGAAGTTGCAGACCAACTTGGAGAAGTTGAGGGCGAAGAAAGACAGACATATGGGAGTAGAACGGATCACCAATAACAGAAATGGAGCTTATGGTAGTGGACCAAATGGATCACCTCAGATCGAGATACGTGAAATAGGTTCGGCTCTAGATGTTGTTCTGATAACTGGATTGGATTTTCAGTTCATGTTTGAGGGGGCGATTCGTTTGCTTCTTGAAGAGGGAGCTGACATTGTAAATGCCAGTTTCTCAGTTGTTGAGGATACCATTTTCCATACCATACATTCTAAGATCGAAGAGTGTGCACCAGGCACGGTAGCTGCAAGGATATCCGACAGACTAAGGAAGTTTGTGAACGAAGCTAGCAGTACTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

7.02

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	13 - 65	4.6e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 257, 301
AfaI	GTAC	2 cut(s)	17, 553
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	490
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	7 cut(s)	41, 100, 170, 272, 410, 503, 545
AluI	AGCT	7 cut(s)	41, 100, 170, 272, 410, 503, 545
Alw21I	GWGCWC	2 cut(s)	102, 490
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	3 cut(s)	12, 257, 301
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	10, 167, 503
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	244, 288
AsuNHI	GCTAGC	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	102, 490
BbvI	GCAGC	3 cut(s)	22, 179, 490
BccI	CCATC	1 cut(s)	126
BcgI	CGANNNNNNTGC	4 cut(s)	373, 407, 467, 501
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	439
BfaI	CTAG	3 cut(s)	21, 332, 546
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	3 cut(s)	11, 168, 504
BlsI	GCNGC	3 cut(s)	12, 169, 505
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	549
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuEI	CTTGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	355, 426
BseBI	CCWGG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	314, 447
BseNI	ACTGG	2 cut(s)	355, 426
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	22, 179, 490
BsiHKAI	GWGCWC	2 cut(s)	102, 490
Bsp1286I	GDGCHC	2 cut(s)	102, 490
Bsp143I	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
BspCNI	CTCAG	2 cut(s)	313, 446
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	12, 257, 301
BsrI	ACTGG	2 cut(s)	355, 426
BssMI	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	3 cut(s)	114, 396, 474
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	4 cut(s)	300, 433, 471, 524
BstKTI	GATC	6 cut(s)	7, 157, 252, 296, 306, 477
BstMBI	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	22, 179, 490
BsuI	GTATCC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	16, 552
CviAII	CATG	2 cut(s)	33, 370
CviJI	RGCY	9 cut(s)	41, 86, 100, 170, 272, 329, 410, 503, 545
CviKI_1	RGCY	9 cut(s)	41, 86, 100, 170, 272, 329, 410, 503, 545
CviQI	GTAC	2 cut(s)	16, 552
DdeI	CTNAG	4 cut(s)	300, 433, 471, 524
DpnI	GATC	6 cut(s)	6, 156, 251, 295, 305, 476
DpnII	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
Eam1104I	CTCTTC	3 cut(s)	114, 396, 474
EarI	CTCTTC	3 cut(s)	114, 396, 474
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	2 cut(s)	36, 373
FaiI	YATR	9 cut(s)	34, 91, 180, 234, 236, 276, 371, 459, 464
FatI	CATG	2 cut(s)	32, 369
FauNDI	CATATG	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	11, 168, 504
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	11, 168, 504
FspBI	CTAG	3 cut(s)	21, 332, 546
GluI	GCNGC	3 cut(s)	11, 168, 504
Hin1II	CATG	2 cut(s)	36, 373
HinfI	GANTC	2 cut(s)	73, 385
HphI	GGTGA	2 cut(s)	244, 288
Hpy166II	GTNNAC	4 cut(s)	175, 284, 488, 538
Hpy188I	TCNGA	5 cut(s)	78, 97, 303, 345, 517
Hpy188III	TCNNGA	3 cut(s)	307, 332, 398
Hpy8I	GTNNAC	4 cut(s)	175, 284, 488, 538
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	167, 193, 488, 506, 557
HpyF3I	CTNAG	4 cut(s)	300, 433, 471, 524
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	36, 373
Kzo9I	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
LmnI	GCTCC	2 cut(s)	269, 407
LpnPI	CCDG	6 cut(s)	52, 165, 336, 439, 477, 504
Lsp1109I	GCAGC	3 cut(s)	22, 179, 490
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	3 cut(s)	21, 332, 546
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	6 cut(s)	6, 156, 251, 295, 305, 476
MboI	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
MboII	GAAGA	5 cut(s)	73, 101, 232, 413, 491
MhlI	GDGCHC	2 cut(s)	102, 490
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	6 cut(s)	63, 207, 309, 370, 397, 436
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	2 cut(s)	36, 373
NmuCI	GTSAC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	73, 385
PkrI	GCNGC	3 cut(s)	12, 169, 505
Ppu21I	YACGTR	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	17, 553
RsaNI	GTAC	2 cut(s)	16, 552
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	11, 168, 504
Sau3AI	GATC	6 cut(s)	4, 154, 249, 293, 303, 474
Sau96I	GGNCC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	102, 490
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SspMI	CTAG	3 cut(s)	21, 332, 546
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	306, 477
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	73, 385
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	10, 167, 503
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	21, 95, 358
TspGWI	ACGGA	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	3 cut(s)	21, 332, 546
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.