Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

6498245 .. 6499712

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCGTTCTCTCATCTCCTCTTATTCATGCCTCTTGTAAAGTCTCCTTGAGACATTTCTATAACACTTTGCCATATTTGGATCCGGTGTTGTGTGTTTGCAAGTACATAGCTAAGGTGCACTTAATTATTTTGTTAATGGGATTCCTTGTTTCTCTCTTCTTCTTTTTTTTGCAGGAAGTGACTTCTTTGCCAGATCAAATAGATGAAGCTGTGAACTACATCAAGAAGTTGCAGACCAACTTGGAGAAAATGAGGGAGAAGAAAGACAGCCAAATGGGAGTAGAGCGGATCACCATTAACTATAATGGAGGTTCACGTAGGGGACTAAATGGTGGCGGGTTAAGATTACCTCAGATCGAGATTCGTGAAATGGGTTCTGTTCTAGATGTTGTTCTGATAACTGGATTGGATTTTCAATTCATGTTTGAGGGGTCGATTCGTATGCTTCTTGAAGAGGGAGCTGACATTGTAAATGCCAGTTTCTCAGTTGTTGAAGATACCATTTTCCACACCATACATTCTAAGATCGGCGAGTCTGCACCAGGCCCGGTAGCTGCAAGGATATCCGACAGACTAAGAAAGTTTGTGAACGAAGCTAGTACTACTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

6.52

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	289
AciI	CCGC	2 cut(s)	289, 339
AclWI	GGATC	3 cut(s)	77, 90, 299
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	107, 604
AgsI	TTSAA	3 cut(s)	419, 455, 497
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	113, 212, 464, 557, 599
AluI	AGCT	5 cut(s)	113, 212, 464, 557, 599
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	46, 49
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	77, 90, 299
AoxI	GGCC	2 cut(s)	3, 547
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	46, 49
BfaI	CTAG	2 cut(s)	386, 600
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	546, 551
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	546, 551
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	409, 480
BseBI	CCWGG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	368, 501
BseNI	ACTGG	2 cut(s)	409, 480
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	5, 549
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	86, 551
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	46, 49
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	5, 549
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	82, 196, 291, 357, 528
BspACI	CCGC	2 cut(s)	289, 339
BspANI	GGCC	2 cut(s)	5, 549
BspCNI	CTCAG	2 cut(s)	367, 500
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	77, 90, 299
BsrBI	CCGCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	409, 480
BssMI	GATC	5 cut(s)	82, 196, 291, 357, 528
Bst2UI	CCWGG	1 cut(s)	546
Bst6I	CTCTTC	2 cut(s)	164, 450
BstBAI	YACGTR	1 cut(s)	320
BstDEI	CTNAG	5 cut(s)	114, 354, 487, 525, 578
BstKTI	GATC	5 cut(s)	85, 199, 294, 360, 531
BstMAI	GTCTC	2 cut(s)	46, 49
BstMBI	GATC	5 cut(s)	82, 196, 291, 357, 528
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	544, 549
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	5, 549
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	106, 603
CviAII	CATG	2 cut(s)	29, 424
CviJI	RGCY	8 cut(s)	5, 113, 212, 273, 464, 549, 557, 599
CviKI_1	RGCY	8 cut(s)	5, 113, 212, 273, 464, 549, 557, 599
CviQI	GTAC	2 cut(s)	106, 603
DdeI	CTNAG	5 cut(s)	114, 354, 487, 525, 578
DpnI	GATC	5 cut(s)	84, 198, 293, 359, 530
DpnII	GATC	5 cut(s)	82, 196, 291, 357, 528
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	164, 450
EarI	CTCTTC	2 cut(s)	164, 450
Eco32I	GATATC	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	567
FaeI	CATG	2 cut(s)	32, 427
FaiI	YATR	8 cut(s)	30, 63, 76, 110, 306, 425, 446, 518
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	28, 423
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	558
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	2 cut(s)	386, 600
GluI	GCNGC	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	5, 549
HapII	CCGG	2 cut(s)	86, 551
Hin1II	CATG	2 cut(s)	32, 427
HinfI	GANTC	4 cut(s)	144, 364, 439, 536
HpaII	CCGG	2 cut(s)	86, 551
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	4 cut(s)	121, 217, 317, 592
Hpy188I	TCNGA	3 cut(s)	357, 399, 571
Hpy188III	TCNNGA	5 cut(s)	226, 361, 368, 386, 452
Hpy8I	GTNNAC	4 cut(s)	121, 217, 317, 592
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	102, 121, 175, 235, 542, 560, 611
HpyF3I	CTNAG	5 cut(s)	114, 354, 487, 525, 578
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	32, 427
Kzo9I	GATC	5 cut(s)	82, 196, 291, 357, 528
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	8 cut(s)	99, 161, 207, 390, 493, 531, 558, 564
Lsp1109I	GCAGC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	386, 600
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	5 cut(s)	84, 198, 293, 359, 530
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	5 cut(s)	82, 196, 291, 357, 528
MboII	GAAGA	5 cut(s)	151, 154, 274, 467, 509
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	126, 419
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	7 cut(s)	30, 43, 249, 305, 363, 424, 451
MseI	TTAA	4 cut(s)	125, 137, 300, 344
MspI	CCGG	2 cut(s)	86, 551
MspR9I	CCNGG	2 cut(s)	546, 551
MvaI	CCWGG	1 cut(s)	546
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	5 cut(s)	82, 196, 291, 357, 528
NlaIII	CATG	2 cut(s)	32, 427
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	144, 364, 439
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	107, 604
RsaNI	GTAC	2 cut(s)	106, 603
SaqAI	TTAA	4 cut(s)	125, 137, 300, 344
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	5 cut(s)	82, 196, 291, 357, 528
Sau96I	GGNCC	1 cut(s)	548
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	2 cut(s)	546, 551
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	9 cut(s)	115, 120, 214, 316, 322, 355, 466, 559, 601
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	126, 419
SsiI	CCGC	2 cut(s)	289, 339
SspMI	CTAG	2 cut(s)	386, 600
StyD4I	CCNGG	2 cut(s)	544, 549
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	360, 437
TasI	AATT	2 cut(s)	126, 419
TatI	WGTACW	2 cut(s)	105, 602
TfiI	GAWTC	3 cut(s)	144, 364, 439
Tru1I	TTAA	4 cut(s)	125, 137, 300, 344
Tru9I	TTAA	4 cut(s)	125, 137, 300, 344
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	17, 222, 412
VneI	GTGCAC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	385
XspI	CTAG	2 cut(s)	386, 600
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.