Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

5202692 .. 5204320

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG063300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCGCTTAATTACTTTGCTGATTAGATCCCTTGATATATTGCAGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGATCAACTTGGAGAAAATGAGAGAGAAGAAAGACAGCCTAATGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACTGATGGAGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGCGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGATTGGCGAGTCTGCACCAACCACAGTAGCTGCAAGGGTATCTGAGAGACTAAGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

8.76

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AclWI	GGATC	2 cut(s)	21, 472
AfaI	GTAC	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	4 cut(s)	155, 251, 332, 425
AluI	AGCT	4 cut(s)	155, 251, 332, 425
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	21, 472
AlwNI	CAGNNNCTG	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	58, 425
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	45, 412
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	3 cut(s)	71, 273, 468
BisI	GCNGC	2 cut(s)	59, 426
BlsI	GCNGC	2 cut(s)	60, 427
BmcAI	AGTACT	1 cut(s)	472
BmsI	GCATC	2 cut(s)	62, 358
Bse1I	ACTGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	369, 429
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	45, 412
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	436
Bsp143I	GATC	5 cut(s)	26, 105, 159, 225, 464
BspCNI	CTCAG	2 cut(s)	368, 430
BspFNI	CGCG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	21, 472
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	26, 105, 159, 225, 464
Bst4CI	ACNGT	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	181, 314
BstDEI	CTNAG	5 cut(s)	156, 355, 393, 438, 446
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	29, 108, 162, 228, 467
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	5 cut(s)	26, 105, 159, 225, 464
BstNSI	RCATGY	1 cut(s)	260
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	45, 412
BstX2I	RGATCY	2 cut(s)	26, 464
BstYI	RGATCY	2 cut(s)	26, 464
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	181, 314
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	257, 292
CviJI	RGCY	7 cut(s)	80, 141, 155, 183, 251, 332, 425
CviKI_1	RGCY	7 cut(s)	80, 141, 155, 183, 251, 332, 425
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	5 cut(s)	156, 355, 393, 438, 446
DpnI	GATC	5 cut(s)	28, 107, 161, 227, 466
DpnII	GATC	5 cut(s)	26, 105, 159, 225, 464
FaeI	CATG	2 cut(s)	260, 295
FaiI	YATR	4 cut(s)	38, 258, 293, 383
FatI	CATG	2 cut(s)	256, 291
Fnu4HI	GCNGC	2 cut(s)	59, 426
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	59, 426
FspBI	CTAG	3 cut(s)	71, 273, 468
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	59, 426
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	260, 295
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	4 cut(s)	232, 302, 307, 404
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	267, 439
Hpy188III	TCNNGA	3 cut(s)	94, 229, 236
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	6 cut(s)	43, 103, 179, 410, 428, 479
HpyF3I	CTNAG	5 cut(s)	156, 355, 393, 438, 446
Hsp92II	CATG	2 cut(s)	260, 295
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	5 cut(s)	26, 105, 159, 225, 464
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	4 cut(s)	29, 75, 165, 361
Lsp1109I	GCAGC	2 cut(s)	45, 412
LweI	GCATC	2 cut(s)	62, 358
MaeI	CTAG	3 cut(s)	71, 273, 468
MalI	GATC	5 cut(s)	28, 107, 161, 227, 466
MboI	GATC	5 cut(s)	26, 105, 159, 225, 464
MboII	GAAGA	2 cut(s)	142, 377
MflI	RGATCY	2 cut(s)	26, 464
MluCI	AATT	4 cut(s)	9, 85, 239, 287
MlyI	GAGTC	2 cut(s)	311, 413
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	3 cut(s)	200, 316, 319
MseI	TTAA	5 cut(s)	8, 165, 212, 318, 342
MspI	CCGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	312
NdeII	GATC	5 cut(s)	26, 105, 159, 225, 464
NlaIII	CATG	2 cut(s)	260, 295
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	232, 307
PkrI	GCNGC	2 cut(s)	60, 427
PleI	GAGTC	2 cut(s)	310, 412
PpsI	GAGTC	2 cut(s)	310, 412
PscI	ACATGT	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	26, 464
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	5 cut(s)	8, 165, 212, 318, 342
SatI	GCNGC	2 cut(s)	59, 426
Sau3AI	GATC	5 cut(s)	26, 105, 159, 225, 464
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	2 cut(s)	311, 413
SetI	ASST	5 cut(s)	157, 253, 278, 334, 427
SfaNI	GCATC	2 cut(s)	62, 358
Sse9I	AATT	4 cut(s)	9, 85, 239, 287
SspMI	CTAG	3 cut(s)	71, 273, 468
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	228, 305
TasI	AATT	4 cut(s)	9, 85, 239, 287
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	232, 307
Tru1I	TTAA	5 cut(s)	8, 165, 212, 318, 342
Tru9I	TTAA	5 cut(s)	8, 165, 212, 318, 342
TseI	GCWGC	2 cut(s)	58, 425
TspDTI	ATGAA	2 cut(s)	81, 280
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	3 cut(s)	71, 273, 468
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.