Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

89231567 .. 89232783

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATGAATAGGCAGTACGGTACATCTAAAACTGACCGCAAAACCATAGAGAAAAACAGGAGGGAACAAATGAAAGCCCTATTCTCCAAGCTCAAGTCTCTTCTACCCCATCAAAGTTCGAGGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATTAAGAATTTGCAGATCGACTTGGAGAAAATGAGAGAGAAGAAAAACAGCCTAATGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACAGATGGAGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGAGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGATTGGCGAGTCTGCACCAACCACAGTAGCAGCAAGGGTATCTGAGAGACTAAGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

9.71

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	13 - 61	1.7e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	3 cut(s)	17, 22, 550
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	443
AluBI	AGCT	4 cut(s)	91, 233, 329, 410
AluI	AGCT	4 cut(s)	91, 233, 329, 410
Alw26I	GTCTC	2 cut(s)	102, 514
AlwI	GGATC	1 cut(s)	550
ApeKI	GCWGC	2 cut(s)	136, 503
ApoI	RAATTY	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	123, 515
BccI	CCATC	2 cut(s)	117, 275
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BcoDI	GTCTC	2 cut(s)	102, 514
BfaI	CTAG	3 cut(s)	149, 351, 546
BisI	GCNGC	2 cut(s)	137, 504
BlsI	GCNGC	2 cut(s)	138, 505
BmcAI	AGTACT	1 cut(s)	550
BmsI	GCATC	2 cut(s)	140, 436
BpuEI	CTTGAG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	447, 507
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	123, 515
BsgI	GTGCAG	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	102, 514
Bsp143I	GATC	4 cut(s)	183, 237, 303, 542
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	446, 508
BspPI	GGATC	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	183, 237, 303, 542
Bst4CI	ACNGT	2 cut(s)	20, 499
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	5 cut(s)	234, 433, 471, 516, 524
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	186, 240, 306, 545
BstMAI	GTCTC	2 cut(s)	102, 514
BstMBI	GATC	4 cut(s)	183, 237, 303, 542
BstNSI	RCATGY	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	123, 515
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	16, 21, 549
CviAII	CATG	2 cut(s)	335, 370
CviJI	RGCY	8 cut(s)	77, 91, 158, 219, 233, 261, 329, 410
CviKI_1	RGCY	8 cut(s)	77, 91, 158, 219, 233, 261, 329, 410
CviQI	GTAC	3 cut(s)	16, 21, 549
DdeI	CTNAG	5 cut(s)	234, 433, 471, 516, 524
DpnI	GATC	4 cut(s)	185, 239, 305, 544
DpnII	GATC	4 cut(s)	183, 237, 303, 542
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	338, 373
FaiI	YATR	4 cut(s)	47, 336, 371, 461
FatI	CATG	2 cut(s)	334, 369
Fnu4HI	GCNGC	2 cut(s)	137, 504
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	137, 504
FspBI	CTAG	3 cut(s)	149, 351, 546
GluI	GCNGC	2 cut(s)	137, 504
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	2 cut(s)	338, 373
HinfI	GANTC	4 cut(s)	310, 380, 385, 482
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	345, 517
Hpy188III	TCNNGA	2 cut(s)	307, 314
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	20, 499
HpyCH4V	TGCA	4 cut(s)	181, 257, 488, 557
HpyF3I	CTNAG	5 cut(s)	234, 433, 471, 516, 524
Hsp92II	CATG	2 cut(s)	338, 373
Kzo9I	GATC	4 cut(s)	183, 237, 303, 542
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	4 cut(s)	43, 153, 243, 439
Lsp1109I	GCAGC	2 cut(s)	123, 515
LweI	GCATC	2 cut(s)	140, 436
MaeI	CTAG	3 cut(s)	149, 351, 546
MalI	GATC	4 cut(s)	185, 239, 305, 544
MboI	GATC	4 cut(s)	183, 237, 303, 542
MboII	GAAGA	3 cut(s)	92, 220, 455
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	4 cut(s)	163, 175, 317, 365
MlyI	GAGTC	2 cut(s)	389, 491
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	54, 114, 278, 394, 397
MseI	TTAA	5 cut(s)	171, 243, 290, 396, 420
MspI	CCGG	1 cut(s)	140
NdeII	GATC	4 cut(s)	183, 237, 303, 542
NlaIII	CATG	2 cut(s)	338, 373
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	310, 385
PkrI	GCNGC	2 cut(s)	138, 505
PleI	GAGTC	2 cut(s)	388, 490
PpsI	GAGTC	2 cut(s)	388, 490
PscI	ACATGT	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	3 cut(s)	17, 22, 550
RsaNI	GTAC	3 cut(s)	16, 21, 549
SaqAI	TTAA	5 cut(s)	171, 243, 290, 396, 420
SatI	GCNGC	2 cut(s)	137, 504
Sau3AI	GATC	4 cut(s)	183, 237, 303, 542
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	2 cut(s)	389, 491
SetI	ASST	5 cut(s)	93, 235, 331, 356, 412
SfaNI	GCATC	2 cut(s)	140, 436
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	163, 175, 317, 365
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	3 cut(s)	149, 351, 546
TaaI	ACNGT	2 cut(s)	20, 499
TaqI	TCGA	5 cut(s)	119, 186, 306, 383, 388
TasI	AATT	4 cut(s)	163, 175, 317, 365
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	310, 385
Tru1I	TTAA	5 cut(s)	171, 243, 290, 396, 420
Tru9I	TTAA	5 cut(s)	171, 243, 290, 396, 420
TseI	GCWGC	2 cut(s)	136, 503
TspDTI	ATGAA	4 cut(s)	20, 86, 159, 358
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	3 cut(s)	149, 351, 546
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.