Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

59440778 .. 59441233

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAACTGGTTATCTTCCTCCAACCCCTCGATGCCATCAACTACAACCTTTGGGATTCATCTGTGAGCCTTACTATTACGAAGCCAGTAATGCCGGCCTTAATATTAATGCCGAGTATAGGTGCAAGGTTGTGTTTGAAATTTAATATTCATGTCTTCTCTACTGAGACCGGTGAATGGAGAGAGATAGTTGTACCATGTCCGCAAGGCTTCAAGTTTTTCGACATCAGGTGTTGGGCTAGCTTTGGTAACAATGGAATTCTATATTGGGTTGCTCAAGATAGTTTGCTCGCATTGCGTACGCCGCTCGTGATCAACAAGATCAATGGTACTAGTACTAATGGTGGTGATATTGTTGATGATGATGACCAATATCAATTTCATGTAATAGAAATTGACTTGCCTCCGAACCACTCCTTCTATAATCCCACAGCTGGTGTTAGGAATTCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

151

Amino Acids

16.97

Weight (kDa)

4.92

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	307
AciI	CCGC	2 cut(s)	203, 305
AcsI	RAATTY	3 cut(s)	140, 258, 445
AfaI	GTAC	4 cut(s)	195, 301, 331, 337
AfiI	CCNNNNNNNGG	3 cut(s)	119, 177, 434
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	139, 214
AhlI	ACTAGT	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	4 cut(s)	250, 282, 363, 395
AluBI	AGCT	2 cut(s)	243, 434
AluI	AGCT	2 cut(s)	243, 434
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	3 cut(s)	140, 258, 445
AseI	ATTAAT	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	185, 359
AsuNHI	GCTAGC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	148
BccI	CCATC	1 cut(s)	44
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	3 cut(s)	240, 333, 454
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	337
BmsI	GCATC	1 cut(s)	22
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 177, 434
Bse118I	RCCGGY	2 cut(s)	94, 170
Bse1I	ACTGG	2 cut(s)	12, 86
Bse3DI	GCAATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	3 cut(s)	119, 177, 434
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	12, 86
BshFI	GGCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	95, 171
BsiWI	CGTACG	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	119, 177, 434
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	312, 321
BspACI	CCGC	2 cut(s)	203, 305
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	293
BsrFI	RCCGGY	2 cut(s)	94, 170
BsrI	ACTGG	2 cut(s)	12, 86
BssAI	RCCGGY	2 cut(s)	94, 170
BssMI	GATC	2 cut(s)	312, 321
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	96, 241, 291
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	315, 324
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	312, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 295, 304
BstV2I	GAAGAC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	96, 241, 291
Cfr10I	RCCGGY	2 cut(s)	94, 170
Csp6I	GTAC	4 cut(s)	194, 300, 330, 336
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	3 cut(s)	152, 198, 383
CviJI	RGCY	7 cut(s)	69, 85, 98, 210, 239, 243, 434
CviKI_1	RGCY	7 cut(s)	69, 85, 98, 210, 239, 243, 434
CviQI	GTAC	4 cut(s)	194, 300, 330, 336
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	314, 323
DpnII	GATC	2 cut(s)	312, 321
Eco31I	GGTCTC	1 cut(s)	161
EcoRI	GAATTC	2 cut(s)	258, 445
FaeI	CATG	3 cut(s)	155, 201, 386
FaiI	YATR	6 cut(s)	119, 153, 199, 265, 384, 423
FatI	CATG	3 cut(s)	151, 197, 382
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	3 cut(s)	240, 333, 454
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	95, 171
Hin1II	CATG	3 cut(s)	155, 201, 386
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	95, 171
HphI	GGTGA	2 cut(s)	185, 359
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	278, 310
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	2 cut(s)	4, 125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 295, 304
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	155, 201, 386
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	312, 321
LpnPI	CCDG	5 cut(s)	99, 108, 184, 214, 420
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	3 cut(s)	240, 333, 454
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	314, 323
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	2 cut(s)	312, 321
MboII	GAAGA	2 cut(s)	7, 148
MluCI	AATT	5 cut(s)	140, 258, 377, 393, 445
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	29, 38, 414
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	3 cut(s)	101, 107, 144
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	95, 171
MwoI	GCNNNNNNNGC	3 cut(s)	91, 295, 304
NaeI	GCCGGC	1 cut(s)	96
NdeII	GATC	2 cut(s)	312, 321
NgoMIV	GCCGGC	1 cut(s)	94
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	155, 201, 386
NmeAIII	GCCGAG	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	56
Pfl23II	CGTACG	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	4 cut(s)	195, 301, 331, 337
RsaNI	GTAC	4 cut(s)	194, 300, 330, 336
SaqAI	TTAA	3 cut(s)	101, 107, 144
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	312, 321
ScaI	AGTACT	1 cut(s)	337
SetI	ASST	7 cut(s)	51, 124, 131, 233, 245, 436, 455
SfaNI	GCATC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	5 cut(s)	140, 258, 377, 393, 445
SsiI	CCGC	2 cut(s)	203, 305
SspI	AATATT	2 cut(s)	105, 148
SspMI	CTAG	3 cut(s)	240, 333, 454
TaqI	TCGA	3 cut(s)	30, 222, 449
TasI	AATT	5 cut(s)	140, 258, 377, 393, 445
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	101, 107, 144
Tru9I	TTAA	3 cut(s)	101, 107, 144
TspDTI	ATGAA	3 cut(s)	48, 140, 371
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	3 cut(s)	140, 258, 445
XspI	CTAG	3 cut(s)	240, 333, 454
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.