Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

6491195 .. 6492400

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATGAATAGGCAGTACAGTACATCTAGAACTGACCGCAAAACCATAGAGAAAAACAGGAGGGAACAAATGAAAGCCCAATTCTCCAAGCTCAAGTCTCTTCTACCCCATCAAAGTTCGAGGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGATCAACTTGGAGAAAATGAGAGAGAAGAAAGACAGCCTAATGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACTGATGGAGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGCGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCATCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

161

Amino Acids

18.31

Weight (kDa)

9.64

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	10 - 61	1.5e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	17, 22
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	446
AluBI	AGCT	5 cut(s)	91, 233, 329, 410, 483
AluI	AGCT	5 cut(s)	91, 233, 329, 410, 483
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	117, 275
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	4 cut(s)	27, 149, 351, 484
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	140, 439
BpuEI	CTTGAG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	183, 237, 303
BspACI	CCGC	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	183, 237, 303
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	259, 392
BstDEI	CTNAG	2 cut(s)	234, 474
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	186, 240, 306
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	3 cut(s)	183, 237, 303
BstNSI	RCATGY	1 cut(s)	338
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	259, 392
Csp6I	GTAC	2 cut(s)	16, 21
CviAII	CATG	2 cut(s)	335, 370
CviJI	RGCY	9 cut(s)	77, 91, 158, 219, 233, 261, 329, 410, 483
CviKI_1	RGCY	9 cut(s)	77, 91, 158, 219, 233, 261, 329, 410, 483
CviQI	GTAC	2 cut(s)	16, 21
DdeI	CTNAG	2 cut(s)	234, 474
DpnI	GATC	3 cut(s)	185, 239, 305
DpnII	GATC	3 cut(s)	183, 237, 303
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	338, 373
FaiI	YATR	4 cut(s)	47, 336, 371, 464
FatI	CATG	2 cut(s)	334, 369
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	4 cut(s)	27, 149, 351, 484
GluI	GCNGC	1 cut(s)	137
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	2 cut(s)	338, 373
HinfI	GANTC	3 cut(s)	310, 380, 385
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	4 cut(s)	27, 172, 307, 314
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	181, 257
HpyF3I	CTNAG	2 cut(s)	234, 474
Hsp92II	CATG	2 cut(s)	338, 373
Kzo9I	GATC	3 cut(s)	183, 237, 303
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	4 cut(s)	43, 153, 243, 439
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	140, 439
MaeI	CTAG	4 cut(s)	27, 149, 351, 484
MalI	GATC	3 cut(s)	185, 239, 305
MboI	GATC	3 cut(s)	183, 237, 303
MboII	GAAGA	3 cut(s)	92, 220, 458
MluCI	AATT	4 cut(s)	80, 163, 317, 365
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	54, 114, 278, 394, 397
MseI	TTAA	4 cut(s)	243, 290, 396, 420
MspI	CCGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	390
NdeII	GATC	3 cut(s)	183, 237, 303
NlaIII	CATG	2 cut(s)	338, 373
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	310, 385
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	334
RsaI	GTAC	2 cut(s)	17, 22
RsaNI	GTAC	2 cut(s)	16, 21
SaqAI	TTAA	4 cut(s)	243, 290, 396, 420
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	3 cut(s)	183, 237, 303
SchI	GAGTC	1 cut(s)	389
SetI	ASST	7 cut(s)	93, 235, 331, 356, 412, 480, 485
SfaNI	GCATC	2 cut(s)	140, 439
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	80, 163, 317, 365
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	4 cut(s)	27, 149, 351, 484
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	119, 306, 383
TasI	AATT	4 cut(s)	80, 163, 317, 365
TatI	WGTACW	2 cut(s)	15, 20
TfiI	GAWTC	2 cut(s)	310, 385
Tru1I	TTAA	4 cut(s)	243, 290, 396, 420
Tru9I	TTAA	4 cut(s)	243, 290, 396, 420
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	4 cut(s)	20, 86, 159, 358
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	4 cut(s)	27, 149, 351, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.