Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

45962259 .. 45963473

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1338200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGAAGTGCCCTAGTTCATCTACAACTGATAGGAAAACCATAGAAAAAAACAGAAGAAATCAAATGAAAGCTCTATTCTCCAAGCTTAATTCTCTTGTTCCCCACCAACGCTCAGGGGAAGCGGCATCGCTGCCGGATCAACTAGATGATGCTGTAAACTACATTAAACAACTACAGACAAACTTGGAGAAGATGAGGGAGAAGAAAGACAGGCTAATGGGGGGAATCGAGAAGAGCACTCATTGCAACGCAGGCTTTGGCCGCTGCGCTGGACCAATAACCGGGGGATCACCATTGGTCGAGATTCATGAAACGGGTTCAGCTCTAGAGGTTCAGATGATAACTGGGTTGGAATACCAGTTCATGTTCAATGAGTCGATTCGCGTGCTTCATGAAGAGGGAGCTGACGTTGTAAATGCCGGTTTCTCAGTTGTTGAAGATACAGTTTTTCATACAATACATTCCAAGATTGAAGAGTTGGCACCAGGCTGTGCAGCTGCAAGGATTTCGGAGAGACTCAATAAGAAGTTTGTGAATGATCAAGCTGATGCACTTGGAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

190

Amino Acids

20.82

Weight (kDa)

6.08

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	13 - 60	8.3e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	125, 265
AclWI	GGATC	2 cut(s)	147, 298
AcoI	YGGCCR	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	373, 440, 476
AjnI	CCWGG	1 cut(s)	487
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	74, 88, 326, 407, 500, 548
AluI	AGCT	6 cut(s)	74, 88, 326, 407, 500, 548
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	2 cut(s)	147, 298
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	133, 267, 497, 500
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	4 cut(s)	120, 254, 487, 509
BcgI	CGANNNNNNTGC	4 cut(s)	370, 404, 492, 526
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	3 cut(s)	15, 146, 329
BfmI	CTRYAG	1 cut(s)	176
BisI	GCNGC	6 cut(s)	126, 134, 265, 268, 498, 501
BlsI	GCNGC	6 cut(s)	127, 135, 266, 269, 499, 502
Bme1390I	CCNGG	2 cut(s)	286, 489
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	286, 489
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	137, 142, 541
BmuI	ACTGGG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	352, 361
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	129, 444
BseNI	ACTGG	2 cut(s)	352, 361
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	4 cut(s)	120, 254, 487, 509
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	137, 285, 423
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	14, 242
Bsp143I	GATC	3 cut(s)	139, 290, 541
BspACI	CCGC	2 cut(s)	125, 265
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	2 cut(s)	128, 443
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	2 cut(s)	310, 394
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	147, 298
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	352, 361
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	139, 290, 541
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	230, 393, 471
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	256, 389
BstDEI	CTNAG	2 cut(s)	115, 430
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	142, 293, 544
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	3 cut(s)	139, 290, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 255, 264
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	284, 487
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	120, 254, 487, 509
BsuRI	GGCC	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	256, 389
CciI	TCATGA	2 cut(s)	310, 394
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	3 cut(s)	311, 367, 395
DdeI	CTNAG	2 cut(s)	115, 430
DpnI	GATC	3 cut(s)	141, 292, 543
DpnII	GATC	3 cut(s)	139, 290, 541
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	3 cut(s)	230, 393, 471
EarI	CTCTTC	3 cut(s)	230, 393, 471
Eco47I	GGWCC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	314, 370, 398
FaiI	YATR	7 cut(s)	44, 312, 368, 396, 456, 566, 568
FatI	CATG	3 cut(s)	310, 366, 394
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	6 cut(s)	126, 134, 265, 268, 498, 501
Fsp4HI	GCNGC	6 cut(s)	126, 134, 265, 268, 498, 501
FspBI	CTAG	3 cut(s)	15, 146, 329
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	6 cut(s)	126, 134, 265, 268, 498, 501
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	3 cut(s)	137, 285, 423
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	3 cut(s)	314, 370, 398
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	5 cut(s)	228, 307, 377, 382, 519
HpaII	CCGG	3 cut(s)	137, 285, 423
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	339, 514
Hpy188III	TCNNGA	5 cut(s)	232, 304, 311, 329, 395
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	249, 497, 503, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 255, 264
HpyF3I	CTNAG	2 cut(s)	115, 430
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	314, 370, 398
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	139, 290, 541
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	120, 254, 487, 509
LweI	GCATC	3 cut(s)	137, 142, 541
MaeI	CTAG	3 cut(s)	15, 146, 329
MaeII	ACGT	1 cut(s)	411
MalI	GATC	3 cut(s)	141, 292, 543
MboI	GATC	3 cut(s)	139, 290, 541
MboII	GAAGA	7 cut(s)	69, 205, 217, 247, 410, 452, 488
MhlI	GDGCHC	2 cut(s)	14, 242
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	386, 513
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	192, 325, 394
MseI	TTAA	2 cut(s)	90, 168
MspA1I	CMGCKG	2 cut(s)	267, 500
MspI	CCGG	3 cut(s)	137, 285, 423
MspR9I	CCNGG	2 cut(s)	286, 489
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	246, 255, 264
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	139, 290, 541
NlaIII	CATG	3 cut(s)	314, 370, 398
NlaIV	GGNNCC	1 cut(s)	486
PagI	TCATGA	2 cut(s)	310, 394
PciSI	GCTCTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	228, 307, 382
PkrI	GCNGC	6 cut(s)	127, 135, 266, 269, 499, 502
PleI	GAGTC	2 cut(s)	385, 513
PpsI	GAGTC	2 cut(s)	385, 513
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	90, 168
SatI	GCNGC	6 cut(s)	126, 134, 265, 268, 498, 501
Sau3AI	GATC	3 cut(s)	139, 290, 541
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	386, 513
ScrFI	CCNGG	2 cut(s)	286, 489
SduI	GDGCHC	2 cut(s)	14, 242
SetI	ASST	8 cut(s)	76, 90, 328, 336, 409, 414, 502, 550
SfaNI	GCATC	3 cut(s)	137, 142, 541
SfcI	CTRYAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	2 cut(s)	125, 265
SspMI	CTAG	3 cut(s)	15, 146, 329
StyD4I	CCNGG	2 cut(s)	284, 487
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	231, 303, 380
TasI	AATT	1 cut(s)	91
TauI	GCSGC	2 cut(s)	128, 267
TfiI	GAWTC	3 cut(s)	228, 307, 382
Tru1I	TTAA	2 cut(s)	90, 168
Tru9I	TTAA	2 cut(s)	90, 168
TseI	GCWGC	4 cut(s)	133, 267, 497, 500
TspDTI	ATGAA	8 cut(s)	9, 83, 299, 327, 355, 383, 411, 443
VpaK11BI	GGWCC	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	3 cut(s)	15, 146, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.