Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Reverse (-)

29518265 .. 29518716

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGGGAGAAGAAAGACAGGCTAATGGGGGGAATCGAGAAGAGCACTCATTGCAACGCAGGCTTTGGCCGCTGTGCTGAACCAATAACCGGGGGATCACCATTGGTTGAGATTCATGAAACGGGTTCAGTGCTAGAGGTTCAGATGATAACTGGGTTGGAATACCAGTTCATGTTCAATGAGTCGATTCGCGTGCTTCATGAAGAGGGAGCTGACGTTGTAAATGCCGGTTTCTCAGTTGTTGAAGATACAGTTTTGCATACAATACATTCCAAGATTGAAGAGTTGGCACCAGGCTGTGCAGCTGCAAGGATTTCGGAGAAACTTAATAAGAAGTTTGTGAATGATCAAGCTGATGCACTTGGAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

125

Amino Acids

13.47

Weight (kDa)

5.16

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	178, 245, 281
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	3 cut(s)	212, 305, 353
AluI	AGCT	3 cut(s)	212, 305, 353
Alw21I	GWGCWC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	302, 305
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	292, 314
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 297, 331
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	91
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	70, 303, 306
BlsI	GCNGC	3 cut(s)	71, 304, 307
Bme1390I	CCNGG	2 cut(s)	91, 294
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	91, 294
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	157, 166
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	157, 166
BseXI	GCAGC	2 cut(s)	292, 314
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	90, 228
BslI	CCNNNNNNNGG	1 cut(s)	89
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	95, 346
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	2 cut(s)	115, 199
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	157, 166
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	95, 346
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	3 cut(s)	35, 198, 276
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	61, 194
BstDEI	CTNAG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	98, 349
BstMBI	GATC	2 cut(s)	95, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 60, 69
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	89, 292
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	292, 314
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	61, 194
CciI	TCATGA	2 cut(s)	115, 199
Cfr10I	RCCGGY	1 cut(s)	227
CviAII	CATG	3 cut(s)	116, 172, 200
CviJI	RGCY	7 cut(s)	22, 63, 69, 212, 297, 305, 353
CviKI_1	RGCY	7 cut(s)	22, 63, 69, 212, 297, 305, 353
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	2 cut(s)	97, 348
DpnII	GATC	2 cut(s)	95, 346
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	3 cut(s)	35, 198, 276
EarI	CTCTTC	3 cut(s)	35, 198, 276
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	119, 175, 203
FaiI	YATR	6 cut(s)	117, 173, 201, 261, 371, 373
FatI	CATG	3 cut(s)	115, 171, 199
FauNDI	CATATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	70, 303, 306
Fsp4HI	GCNGC	3 cut(s)	70, 303, 306
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	70, 303, 306
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	90, 228
Hin1II	CATG	3 cut(s)	119, 175, 203
HinfI	GANTC	4 cut(s)	33, 112, 182, 187
HpaII	CCGG	2 cut(s)	90, 228
HphI	GGTGA	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	144, 319
Hpy188III	TCNNGA	3 cut(s)	37, 116, 200
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	5 cut(s)	54, 259, 302, 308, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 60, 69
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	119, 175, 203
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	95, 346
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	4, 45, 103, 138, 179, 241, 279, 306
Lsp1109I	GCAGC	2 cut(s)	292, 314
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	97, 348
MboI	GATC	2 cut(s)	95, 346
MboII	GAAGA	5 cut(s)	22, 52, 215, 257, 293
MhlI	GDGCHC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	130, 199
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	72, 305
MspI	CCGG	2 cut(s)	90, 228
MspR9I	CCNGG	2 cut(s)	91, 294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	51, 60, 69
NciI	CCSGG	1 cut(s)	91
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	2 cut(s)	95, 346
NlaIII	CATG	3 cut(s)	119, 175, 203
NlaIV	GGNNCC	1 cut(s)	291
PagI	TCATGA	2 cut(s)	115, 199
PciSI	GCTCTTC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	33, 112, 187
PkrI	GCNGC	3 cut(s)	71, 304, 307
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	3 cut(s)	70, 303, 306
Sau3AI	GATC	2 cut(s)	95, 346
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	91, 294
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	5 cut(s)	141, 214, 219, 307, 355
SfaNI	GCATC	1 cut(s)	346
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	89, 292
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	36, 185
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	33, 112, 187
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	2 cut(s)	302, 305
TspDTI	ATGAA	5 cut(s)	104, 132, 160, 188, 216
TspRI	CASTG	1 cut(s)	135
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.