Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005003

Physical Location & Seq

Genomic Coordinates Forward (+)

6510377 .. 6511231

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAAGCCCTATTCTCCAAGCTGAAGTCTCTTCTACCCCATCAAAGTTCGAGGGAAGTAGCATCGCTTCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGTTCAACTTGGAGAAAATGAGAGAGAAGAAAGACAACCTAATGAGAGTAGCTAAGATCATTAAAAATAACAATGCAGGCTTTGTTGGTGGACTTACTGATGGTGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGCGTACTTAATGAAGAGGGAGCTGACATTGTTAATGCCAGTTTCTCAGTTGTTGAAGATGCCATTTTACACGTAATACATTCTAAGATTGGCGAGTCTGCACCAACCGCAGTAGCTGCAAGGGTATCTGCAAGACTAAGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

9.59

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20970
fragaria_vesca	FvH4_3g09050
malus_domestica	MD05G1338200.v1.1
prunus_persica	Prupe.4G048500_v2.0.a1 Prupe.4G048500_v2.0.a1
pyrus_communis	pycom05g28960 pycom10g24530
rosa_chinensis	RchiOBHm_Chr5g0008581 RchiOBHm_Chr5g0008601
rosa_laevigata	RLG00000031585 RLG00000031587
rosa_multiflora	Rmu_co8408735.1_g000001 Rmu_sc0001665.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067940 Rroxscaffold_1G00067960
rosa_rugosa	Rorug04G0437000 Rorug04G0437100 Rorug04G0437200 Rorug04G0437200 Rorug04G0437400.1
rosa_samantha	Rh5AG065700 Rh5AG065900 Rh5BG063200 Rh5BG063300 Rh5CG073400 Rh5CG073500 Rh5DG062900 Rh5DG063000
rosa_wichuraiana	Rw5G006310 Rw5G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	324, 481
AflIII	ACRYGT	2 cut(s)	265, 388
AgsI	TTSAA	2 cut(s)	118, 374
AluBI	AGCT	5 cut(s)	22, 164, 260, 341, 434
AluI	AGCT	5 cut(s)	22, 164, 260, 341, 434
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	48, 206
BceAI	ACGGC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	80, 282, 477
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmcAI	AGTACT	1 cut(s)	481
BmsI	GCATC	2 cut(s)	71, 367
BsaAI	YACGTR	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	70
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	168, 234, 473
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	168, 234, 473
Bst6I	CTCTTC	2 cut(s)	36, 327
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	4 cut(s)	165, 364, 402, 455
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	171, 237, 476
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	3 cut(s)	168, 234, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 434
BstNSI	RCATGY	1 cut(s)	269
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	323, 480
CviAII	CATG	2 cut(s)	266, 301
CviJI	RGCY	8 cut(s)	8, 22, 89, 164, 192, 260, 341, 434
CviKI_1	RGCY	8 cut(s)	8, 22, 89, 164, 192, 260, 341, 434
CviQI	GTAC	2 cut(s)	323, 480
DdeI	CTNAG	4 cut(s)	165, 364, 402, 455
DpnI	GATC	3 cut(s)	170, 236, 475
DpnII	GATC	3 cut(s)	168, 234, 473
Eam1104I	CTCTTC	2 cut(s)	36, 327
EarI	CTCTTC	2 cut(s)	36, 327
Eco57I	CTGAAG	1 cut(s)	44
FaeI	CATG	2 cut(s)	269, 304
FaiI	YATR	2 cut(s)	267, 302
FatI	CATG	2 cut(s)	265, 300
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	3 cut(s)	80, 282, 477
GluI	GCNGC	1 cut(s)	435
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	2 cut(s)	269, 304
HinfI	GANTC	4 cut(s)	241, 311, 316, 413
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	4 cut(s)	71, 103, 238, 245
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	6 cut(s)	112, 188, 419, 437, 449, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 434
HpyF3I	CTNAG	4 cut(s)	165, 364, 402, 455
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	269, 304
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	168, 234, 473
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	3 cut(s)	84, 174, 370
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	2 cut(s)	71, 367
MaeI	CTAG	3 cut(s)	80, 282, 477
MaeII	ACGT	1 cut(s)	390
MalI	GATC	3 cut(s)	170, 236, 475
MboI	GATC	3 cut(s)	168, 234, 473
MboII	GAAGA	4 cut(s)	23, 151, 344, 386
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	3 cut(s)	94, 248, 296
MlyI	GAGTC	2 cut(s)	320, 422
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	45, 328
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	4 cut(s)	174, 221, 327, 351
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	425, 434
NdeII	GATC	3 cut(s)	168, 234, 473
NlaIII	CATG	2 cut(s)	269, 304
NspI	RCATGY	1 cut(s)	269
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	241, 316
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	2 cut(s)	319, 421
PpsI	GAGTC	2 cut(s)	319, 421
Ppu21I	YACGTR	1 cut(s)	391
PscI	ACATGT	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	2 cut(s)	324, 481
RsaNI	GTAC	2 cut(s)	323, 480
SaqAI	TTAA	4 cut(s)	174, 221, 327, 351
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	3 cut(s)	168, 234, 473
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	320, 422
SetI	ASST	8 cut(s)	24, 153, 166, 262, 287, 343, 393, 436
SfaNI	GCATC	2 cut(s)	71, 367
Sse9I	AATT	3 cut(s)	94, 248, 296
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	3 cut(s)	80, 282, 477
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	50, 237, 314
TasI	AATT	3 cut(s)	94, 248, 296
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	241, 316
Tru1I	TTAA	4 cut(s)	174, 221, 327, 351
Tru9I	TTAA	4 cut(s)	174, 221, 327, 351
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	17, 90, 289, 345
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	3 cut(s)	80, 282, 477
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.