Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

11349922 .. 11350694

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTGGAGGAAGCAGATTTCAAGAACCAGTGAGGATGAGCCGTAGGAAACAAGTAACAAAAGAGAAGGAAGAAGATGAAAACTTCAAATCTCCAAATCTTGAAGCAGAGAGACGTAGAAGAGAGAAGCTTCATTGTCGGCTTATGGCTCTGCGATCTCATGTCCCCATTGTCACCAACATGACTAAAGCAAGTATTGTTGAAGATGCGATTACTTACATAGGAGAGCTTCAAAACAATGTTAAGAATCTCTTAGAGACATTTCATGAAATGGAAGAAGCTCCTCCTGAGATTGATGAAGAACAAACGGATCCAATGATAAAACCTGAAGTTGAAACTAGTGATCTTAACGAAGAGATGAAGAAACTCGGAATCGAGGAGAATGTGCAATTGTGTAAGATTGGGGAGAGGAAGTTTTGGTTAAAGATCATAACAGAGAAGAGAGATGGGATCTTTACTAAATTCATGGAGGTTATGAGATTTCTCGGATTCGAGATTATCGATATTAGTCTAACAACTTCAAATGGAGCAATTCTTATTAGTGCCTCTGTTCAGACACAGGAACTCTGTGATGTTGAACAGACAAAAGATTTTCTTTTGGAAGTTATGAGAAGCAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

207

Amino Acids

24.02

Weight (kDa)

5.09

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	35 - 78	1.6e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	305, 318, 458
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	348
AgsI	TTSAA	8 cut(s)	23, 88, 104, 203, 233, 335, 522, 578
AhlI	ACTAGT	1 cut(s)	338
AluBI	AGCT	3 cut(s)	130, 229, 281
AluI	AGCT	3 cut(s)	130, 229, 281
Alw26I	GTCTC	2 cut(s)	106, 251
AlwI	GGATC	3 cut(s)	305, 318, 458
ApoI	RAATTY	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	310
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	106, 251
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bse1I	ACTGG	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	501
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	273, 392
BshVI	ATCGAT	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	106, 251
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	155, 310, 343, 426, 450
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	305, 318, 458
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	155, 310, 343, 426, 450
Bst6I	CTCTTC	3 cut(s)	115, 348, 434
BstDEI	CTNAG	2 cut(s)	253, 288
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	158, 313, 346, 429, 453
BstMAI	GTCTC	2 cut(s)	106, 251
BstMBI	GATC	5 cut(s)	155, 310, 343, 426, 450
BstX2I	RGATCY	2 cut(s)	310, 450
BstYI	RGATCY	2 cut(s)	310, 450
Bsu15I	ATCGAT	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	501
CviAII	CATG	4 cut(s)	161, 181, 266, 466
CviJI	RGCY	6 cut(s)	42, 130, 142, 149, 229, 281
CviKI_1	RGCY	6 cut(s)	42, 130, 142, 149, 229, 281
DdeI	CTNAG	2 cut(s)	253, 288
DpnI	GATC	5 cut(s)	157, 312, 345, 428, 452
DpnII	GATC	5 cut(s)	155, 310, 343, 426, 450
Eam1104I	CTCTTC	3 cut(s)	115, 348, 434
EarI	CTCTTC	3 cut(s)	115, 348, 434
Eco57I	CTGAAG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	4 cut(s)	164, 184, 269, 469
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 579, 611
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	160, 180, 265, 465
FokI	GGATG	1 cut(s)	49
FspBI	CTAG	1 cut(s)	339
Hin1II	CATG	4 cut(s)	164, 184, 269, 469
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	247, 372, 489
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	371, 488, 555
Hpy188III	TCNNGA	5 cut(s)	23, 101, 266, 287, 493
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	253, 288
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	164, 184, 269, 469
Kzo9I	GATC	5 cut(s)	155, 310, 343, 426, 450
LmnI	GCTCC	2 cut(s)	286, 527
LpnPI	CCDG	4 cut(s)	42, 300, 339, 545
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	55, 172
MalI	GATC	5 cut(s)	157, 312, 345, 428, 452
MboI	GATC	5 cut(s)	155, 310, 343, 426, 450
MboII	GAAGA	9 cut(s)	83, 86, 132, 215, 287, 311, 365, 373, 451
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	2 cut(s)	310, 450
MluCI	AATT	3 cut(s)	389, 461, 531
MnlI	CCTC	6 cut(s)	27, 294, 370, 402, 463, 556
MseI	TTAA	3 cut(s)	243, 348, 422
MslI	CAYNNNNRTG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	389
NdeII	GATC	5 cut(s)	155, 310, 343, 426, 450
NlaIII	CATG	4 cut(s)	164, 184, 269, 469
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	247, 372, 489
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	310, 450
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	243, 348, 422
Sau3AI	GATC	5 cut(s)	155, 310, 343, 426, 450
SetI	ASST	6 cut(s)	118, 132, 231, 283, 328, 474
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	3 cut(s)	389, 461, 531
SspMI	CTAG	1 cut(s)	339
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	375, 492, 501
TasI	AATT	3 cut(s)	389, 461, 531
TfiI	GAWTC	3 cut(s)	247, 372, 489
Tru1I	TTAA	3 cut(s)	243, 348, 422
Tru9I	TTAA	3 cut(s)	243, 348, 422
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	7 cut(s)	93, 122, 254, 282, 312, 374, 454
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	461
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.