Transcription factor DYSFUNCTIONAL TAPETUM
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21330 |
| fragaria_vesca | FvH4_3g03170 |
| malus_domestica | MD10G1309600.v1.1 |
| prunus_persica | Prupe.4G030600_v2.0.a1 |
| pyrus_communis | pycom05g30620 pycom10g26100 |
| rosa_chinensis | RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741 |
| rosa_multiflora | Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026 |
| rosa_roxburghii | Rroxscaffold_1G00053450 Rroxscaffold_1G00054300 |
| rosa_rugosa | Rorug05G0088200 |
| rosa_samantha | Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500 |
| rosa_wichuraiana | Rw5G004030 Rw5G016340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 161 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfaI | GTAC | 2 cut(s) | 374, 406 |
| AgsI | TTSAA | 3 cut(s) | 88, 290, 452 |
| AluBI | AGCT | 3 cut(s) | 49, 82, 121 |
| AluI | AGCT | 3 cut(s) | 49, 82, 121 |
| Alw26I | GTCTC | 1 cut(s) | 431 |
| AoxI | GGCC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 3 cut(s) | 49, 79, 143 |
| ApoI | RAATTY | 1 cut(s) | 161 |
| AspLEI | GCGC | 2 cut(s) | 106, 115 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 291, 324 |
| BbvCI | CCTCAGC | 1 cut(s) | 122 |
| BbvI | GCAGC | 3 cut(s) | 36, 91, 130 |
| BccI | CCATC | 3 cut(s) | 38, 194, 428 |
| BcoDI | GTCTC | 1 cut(s) | 431 |
| BfaI | CTAG | 2 cut(s) | 116, 478 |
| BfmI | CTRYAG | 2 cut(s) | 50, 144 |
| BfoI | RGCGCY | 1 cut(s) | 116 |
| BisI | GCNGC | 3 cut(s) | 50, 80, 144 |
| BlsI | GCNGC | 3 cut(s) | 51, 81, 145 |
| BmsI | GCATC | 3 cut(s) | 107, 130, 381 |
| Bpu10I | CCTNAGC | 1 cut(s) | 122 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bse1I | ACTGG | 1 cut(s) | 264 |
| Bse3DI | GCAATG | 1 cut(s) | 333 |
| BseGI | GGATG | 1 cut(s) | 338 |
| BseMI | GCAATG | 1 cut(s) | 333 |
| BseMII | CTCAG | 2 cut(s) | 113, 206 |
| BseNI | ACTGG | 1 cut(s) | 264 |
| BseXI | GCAGC | 3 cut(s) | 36, 91, 130 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BsmAI | GTCTC | 1 cut(s) | 431 |
| BsnI | GGCC | 1 cut(s) | 269 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspCNI | CTCAG | 2 cut(s) | 114, 205 |
| BspMAI | CTGCAG | 2 cut(s) | 54, 148 |
| BsrDI | GCAATG | 1 cut(s) | 333 |
| BsrI | ACTGG | 1 cut(s) | 264 |
| Bst4CI | ACNGT | 3 cut(s) | 352, 388, 425 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 3 cut(s) | 122, 192, 395 |
| BstF5I | GGATG | 1 cut(s) | 338 |
| BstH2I | RGCGCY | 1 cut(s) | 116 |
| BstHHI | GCGC | 2 cut(s) | 106, 115 |
| BstMAI | GTCTC | 1 cut(s) | 431 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 110, 112 |
| BstSFI | CTRYAG | 2 cut(s) | 50, 144 |
| BstV1I | GCAGC | 3 cut(s) | 36, 91, 130 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BtsCI | GGATG | 1 cut(s) | 338 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| CfoI | GCGC | 2 cut(s) | 106, 115 |
| Csp6I | GTAC | 2 cut(s) | 373, 405 |
| CviAII | CATG | 1 cut(s) | 271 |
| CviJI | RGCY | 7 cut(s) | 49, 82, 121, 191, 249, 269, 285 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 82, 121, 191, 249, 269, 285 |
| CviQI | GTAC | 2 cut(s) | 373, 405 |
| DdeI | CTNAG | 3 cut(s) | 122, 192, 395 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| FaeI | CATG | 1 cut(s) | 274 |
| FaiI | YATR | 5 cut(s) | 272, 384, 415, 417, 431 |
| FatI | CATG | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 3 cut(s) | 50, 80, 144 |
| FokI | GGATG | 1 cut(s) | 325 |
| Fsp4HI | GCNGC | 3 cut(s) | 50, 80, 144 |
| FspBI | CTAG | 2 cut(s) | 116, 478 |
| GlaI | GCGC | 2 cut(s) | 105, 114 |
| GluI | GCNGC | 3 cut(s) | 50, 80, 144 |
| HaeII | RGCGCY | 1 cut(s) | 116 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| HhaI | GCGC | 2 cut(s) | 106, 115 |
| Hin1II | CATG | 1 cut(s) | 274 |
| Hin6I | GCGC | 2 cut(s) | 104, 113 |
| HinP1I | GCGC | 2 cut(s) | 104, 113 |
| HinfI | GANTC | 2 cut(s) | 26, 169 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy188I | TCNGA | 2 cut(s) | 174, 195 |
| Hpy188III | TCNNGA | 1 cut(s) | 359 |
| HpyCH4III | ACNGT | 3 cut(s) | 352, 388, 425 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 73, 146 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 110, 112 |
| HpyF3I | CTNAG | 3 cut(s) | 122, 192, 395 |
| Hsp92II | CATG | 1 cut(s) | 274 |
| HspAI | GCGC | 2 cut(s) | 104, 113 |
| LmnI | GCTCC | 3 cut(s) | 46, 76, 323 |
| LpnPI | CCDG | 3 cut(s) | 59, 245, 372 |
| Lsp1109I | GCAGC | 3 cut(s) | 36, 91, 130 |
| LweI | GCATC | 3 cut(s) | 107, 130, 381 |
| MaeI | CTAG | 2 cut(s) | 116, 478 |
| MaeIII | GTNAC | 3 cut(s) | 307, 419, 439 |
| MboII | GAAGA | 5 cut(s) | 161, 169, 247, 374, 451 |
| MluCI | AATT | 1 cut(s) | 161 |
| MnlI | CCTC | 6 cut(s) | 16, 103, 117, 236, 259, 325 |
| MseI | TTAA | 3 cut(s) | 42, 401, 467 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 110, 112 |
| NlaIII | CATG | 1 cut(s) | 274 |
| NmuCI | GTSAC | 2 cut(s) | 307, 419 |
| PfeI | GAWTC | 2 cut(s) | 26, 169 |
| PkrI | GCNGC | 3 cut(s) | 51, 81, 145 |
| PstI | CTGCAG | 2 cut(s) | 54, 148 |
| RsaI | GTAC | 2 cut(s) | 374, 406 |
| RsaNI | GTAC | 2 cut(s) | 373, 405 |
| SaqAI | TTAA | 3 cut(s) | 42, 401, 467 |
| SatI | GCNGC | 3 cut(s) | 50, 80, 144 |
| SetI | ASST | 7 cut(s) | 51, 84, 123, 247, 278, 317, 458 |
| SfaNI | GCATC | 3 cut(s) | 107, 130, 381 |
| SfcI | CTRYAG | 2 cut(s) | 50, 144 |
| SgeI | CNNG | 7 cut(s) | 82, 86, 119, 128, 272, 283, 371 |
| Sse9I | AATT | 1 cut(s) | 161 |
| SspMI | CTAG | 2 cut(s) | 116, 478 |
| TaaI | ACNGT | 3 cut(s) | 352, 388, 425 |
| TasI | AATT | 1 cut(s) | 161 |
| TatI | WGTACW | 2 cut(s) | 372, 404 |
| TfiI | GAWTC | 2 cut(s) | 26, 169 |
| Tru1I | TTAA | 3 cut(s) | 42, 401, 467 |
| Tru9I | TTAA | 3 cut(s) | 42, 401, 467 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 2 cut(s) | 307, 419 |
| TseI | GCWGC | 3 cut(s) | 49, 79, 143 |
| Tsp45I | GTSAC | 2 cut(s) | 307, 419 |
| TspDTI | ATGAA | 3 cut(s) | 147, 170, 327 |
| TspRI | CASTG | 1 cut(s) | 301 |
| XapI | RAATTY | 1 cut(s) | 161 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 325 |
| XspI | CTAG | 2 cut(s) | 116, 478 |