Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Reverse (-)

30688944 .. 30689431

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACTCTGTGAGTTGTGTCTTGGATGAATTATGCTTAGCAGAAGAAGAAGGCAGCGGAGGGGGAAGGATGAGCTTCAAATCCAAAACTGACGGCGAATTCAAATCCAAAAATCTGTTCGCCGAGAGGAGGAGAAGGGAGAAGCTAAGTGGAAGACTCCTTGCACTACGTGCATTGGTTCCGAATATCACAAATATGAACAAAGCAACCATTGTTGAGGATGCCATCACTTACATCCAGGAGCTGCAGCAGAAAGTAAACCTCCTCAAGGACCAGATTTTTGAGATGGAAGCATCATCAGAAGAAACACTGGAGCCGAACACAGAAGAAACTCATCCTGATGCAGCAGAAGAGATGAAGATATTCGGGATTCAGGTTTCAACAACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

4.83

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	129, 268
AgsI	TTSAA	3 cut(s)	79, 103, 381
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	75, 145, 244, 390
AluI	AGCT	4 cut(s)	75, 145, 244, 390
AlwNI	CAGNNNCTG	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	54, 244, 247, 344
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	4 cut(s)	66, 231, 259, 356
BccI	CCATC	2 cut(s)	233, 280
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	55, 245, 248, 345
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	4 cut(s)	56, 246, 249, 346
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	180, 315
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	3 cut(s)	211, 302, 331
BpiI	GAAGAC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 268
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	5 cut(s)	31, 75, 226, 234, 334
BseLI	CCNNNNNNNGG	2 cut(s)	129, 268
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	3 cut(s)	142, 145, 254
BseXI	GCAGC	4 cut(s)	66, 231, 259, 356
BslI	CCNNNNNNNGG	2 cut(s)	129, 268
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	180, 315
BspMAI	CTGCAG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	37, 146
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	5 cut(s)	31, 75, 226, 234, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	4 cut(s)	66, 231, 259, 356
BstV2I	GAAGAC	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	31, 75, 226, 234, 334
BtsIMutI	CAGTG	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	271
CviJI	RGCY	5 cut(s)	75, 145, 244, 316, 390
CviKI_1	RGCY	5 cut(s)	75, 145, 244, 316, 390
DdeI	CTNAG	2 cut(s)	37, 146
DraIII	CACNNNGTG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	237
FaiI	YATR	2 cut(s)	34, 197
Fnu4HI	GCNGC	4 cut(s)	55, 245, 248, 345
FokI	GGATG	5 cut(s)	38, 82, 221, 233, 321
Fsp4HI	GCNGC	4 cut(s)	55, 245, 248, 345
GluI	GCNGC	4 cut(s)	55, 245, 248, 345
GsuI	CTGGAG	1 cut(s)	332
HinfI	GANTC	2 cut(s)	156, 370
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	183, 301
Hpy188III	TCNNGA	2 cut(s)	338, 367
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	44, 60, 129
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	164, 173, 247, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	37, 146
HpySE526I	ACGT	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	241, 313
LpnPI	CCDG	6 cut(s)	224, 251, 287, 296, 351, 359
Lsp1109I	GCAGC	4 cut(s)	66, 231, 259, 356
LweI	GCATC	3 cut(s)	211, 302, 331
MaeII	ACGT	1 cut(s)	169
MboII	GAAGA	7 cut(s)	56, 59, 165, 314, 338, 362, 370
MluCI	AATT	2 cut(s)	29, 98
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	53, 120, 123, 211, 272, 275
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	194, 339
MspA1I	CMGCKG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	180, 315
NmeAIII	GCCGAG	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	56, 246, 249, 346
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	180, 315
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	194, 339
SatI	GCNGC	4 cut(s)	55, 245, 248, 345
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	7 cut(s)	77, 147, 172, 246, 264, 378, 392
SfaNI	GCATC	3 cut(s)	211, 302, 331
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	194, 339
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	29, 98
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	172
TasI	AATT	2 cut(s)	29, 98
TfiI	GAWTC	1 cut(s)	370
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	4 cut(s)	54, 244, 247, 344
TspDTI	ATGAA	4 cut(s)	17, 42, 212, 371
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.