Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

1687520 .. 1688818

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAATTTGTAGGCTCTCCCTTGGATGAACTATACCTAAGTCCTGATCAACTAGAAGACAACAGCCGAGGAGGAAGGATGGGTCGAAGGAGATACAACGATGTAGTAGATGGACCTCCCATTTACAAATCCAAGAATCTGAATGCCGAAAGGAAGAGAAGGGCGAAGCTCAGTGACAGACTCCTCAAGCTACGCTCATTAGTCCCCATTATCACAAATATGAATAAAGCGACGATCGTTGATGACGCGATTACTTATATCTATGAGCTGCAGAAGGAGGTGAACATGCTTCAGGAACAGCTCTTTGAGATGGAAGCATTGTCTTCACTAGAGGTGCCGGAGCCAAAGCCGAGGAAAAAAGAAACTGATGCAGCAGAAGAGATGAAGAAATCTGGGATTCAGGCAGACGTTAGTGTGACTCAGATTGATGGGGACAAACTTTGGATAAAGGCGGTTTTCGCGAAGAAAAGAGGTGGATTTACCAAACTGATAGAGGCCATGACTGAGTTTGGGTTTGAACTCAATGATACCAGTGTCACTACCTCAAATGGAGCAATGCTTGTTTCTTCCTGGGTCACTGGATTCCATTGCGATACGCTTCCAGTGCAGCAAACCAGGGAACTGATGCTGGACATCATTAATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

217

Amino Acids

24.43

Weight (kDa)

5.44

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	48 - 91	9.5e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccII	CGCG	2 cut(s)	248, 461
AciI	CCGC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	2 cut(s)	569, 614
AluBI	AGCT	4 cut(s)	169, 190, 268, 301
AluI	AGCT	4 cut(s)	169, 190, 268, 301
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	268, 371, 607
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanI	GGYRCC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	63, 315
BbvI	GCAGC	3 cut(s)	255, 383, 619
BccI	CCATC	4 cut(s)	73, 104, 304, 422
BciT130I	CCWGG	2 cut(s)	571, 616
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	2 cut(s)	53, 329
BfmI	CTRYAG	1 cut(s)	269
BisI	GCNGC	3 cut(s)	269, 372, 608
BlsI	GCNGC	3 cut(s)	270, 373, 609
Bme1390I	CCNGG	2 cut(s)	571, 616
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	336, 342
BmrFI	CCNGG	2 cut(s)	571, 616
BmsI	GCATC	2 cut(s)	358, 615
BpiI	GAAGAC	2 cut(s)	63, 315
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	5 cut(s)	21, 67, 350, 570, 615
Bse1I	ACTGG	3 cut(s)	531, 583, 602
Bse3DI	GCAATG	2 cut(s)	561, 586
BseBI	CCWGG	2 cut(s)	571, 616
BseDI	CCNNGG	5 cut(s)	21, 67, 350, 570, 615
BseGI	GGATG	2 cut(s)	31, 84
BseMI	GCAATG	2 cut(s)	561, 586
BseMII	CTCAG	3 cut(s)	184, 434, 495
BseNI	ACTGG	3 cut(s)	531, 583, 602
BseRI	GAGGAG	2 cut(s)	84, 173
BseXI	GCAGC	3 cut(s)	255, 383, 619
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	2 cut(s)	248, 461
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	188, 446
BsmFI	GGGAC	2 cut(s)	188, 446
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	46, 234
Bsp68I	TCGCGA	1 cut(s)	461
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	183, 433, 496
BspFNI	CGCG	2 cut(s)	248, 461
BspLI	GGNNCC	2 cut(s)	336, 342
BspMAI	CTGCAG	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	561, 586
BsrI	ACTGG	3 cut(s)	531, 583, 602
BssECI	CCNNGG	5 cut(s)	21, 67, 350, 570, 615
BssMI	GATC	2 cut(s)	46, 234
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	571, 616
Bst6I	CTCTTC	2 cut(s)	149, 372
BstDEI	CTNAG	4 cut(s)	38, 170, 420, 504
BstF5I	GGATG	2 cut(s)	31, 84
BstFNI	CGCG	2 cut(s)	248, 461
BstKTI	GATC	2 cut(s)	49, 237
BstMBI	GATC	2 cut(s)	46, 234
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 604
BstNI	CCWGG	2 cut(s)	571, 616
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	569, 614
BstSFI	CTRYAG	1 cut(s)	269
BstUI	CGCG	2 cut(s)	248, 461
BstV1I	GCAGC	3 cut(s)	255, 383, 619
BstV2I	GAAGAC	2 cut(s)	63, 315
BsuRI	GGCC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	31, 84
BtsIMutI	CAGTG	4 cut(s)	178, 538, 576, 609
BtuMI	TCGCGA	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	254
CviAII	CATG	2 cut(s)	286, 499
CviJI	RGCY	9 cut(s)	15, 66, 169, 190, 268, 301, 343, 349, 497
CviKI_1	RGCY	9 cut(s)	15, 66, 169, 190, 268, 301, 343, 349, 497
DdeI	CTNAG	4 cut(s)	38, 170, 420, 504
DpnI	GATC	2 cut(s)	48, 236
DpnII	GATC	2 cut(s)	46, 234
Eam1104I	CTCTTC	2 cut(s)	149, 372
EarI	CTCTTC	2 cut(s)	149, 372
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	569, 614
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	289, 502
FaiI	YATR	8 cut(s)	34, 221, 258, 264, 287, 500, 647, 649
FaqI	GGGAC	2 cut(s)	188, 446
FatI	CATG	2 cut(s)	285, 498
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	269, 372, 608
FokI	GGATG	2 cut(s)	38, 91
Fsp4HI	GCNGC	3 cut(s)	269, 372, 608
FspBI	CTAG	2 cut(s)	53, 329
GluI	GCNGC	3 cut(s)	269, 372, 608
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	289, 502
HinfI	GANTC	5 cut(s)	136, 180, 397, 418, 582
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	141, 423
Hpy188III	TCNNGA	3 cut(s)	44, 293, 460
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	4 cut(s)	69, 81, 153, 268
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	271, 371, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 604
HpyF3I	CTNAG	4 cut(s)	38, 170, 420, 504
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	289, 502
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 234
LmnI	GCTCC	2 cut(s)	340, 551
Lsp1109I	GCAGC	3 cut(s)	255, 383, 619
LweI	GCATC	2 cut(s)	358, 615
MaeI	CTAG	2 cut(s)	53, 329
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	4 cut(s)	173, 415, 535, 574
MalI	GATC	2 cut(s)	48, 236
MboI	GATC	2 cut(s)	46, 234
MboII	GAAGA	7 cut(s)	68, 166, 315, 389, 397, 475, 558
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	174, 412
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	571, 616
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	2 cut(s)	571, 616
MvnI	CGCG	2 cut(s)	248, 461
MwoI	GCNNNNNNNGC	2 cut(s)	458, 604
NdeII	GATC	2 cut(s)	46, 234
NlaIII	CATG	2 cut(s)	289, 502
NlaIV	GGNNCC	2 cut(s)	336, 342
NmeAIII	GCCGAG	2 cut(s)	92, 375
NmuCI	GTSAC	4 cut(s)	173, 415, 535, 574
NruI	TCGCGA	1 cut(s)	461
NspI	RCATGY	1 cut(s)	289
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	136, 397, 582
PkrI	GCNGC	3 cut(s)	270, 373, 609
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	2 cut(s)	174, 412
PpsI	GAGTC	2 cut(s)	174, 412
PshBI	ATTAAT	1 cut(s)	639
Psp6I	CCWGG	2 cut(s)	569, 614
PspGI	CCWGG	2 cut(s)	569, 614
PspN4I	GGNNCC	2 cut(s)	336, 342
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	273
PvuI	CGATCG	1 cut(s)	237
RruI	TCGCGA	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	3 cut(s)	269, 372, 608
Sau3AI	GATC	2 cut(s)	46, 234
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	174, 412
ScrFI	CCNGG	2 cut(s)	571, 616
SfaNI	GCATC	2 cut(s)	358, 615
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	2 cut(s)	53, 329
StyD4I	CCNGG	2 cut(s)	569, 614
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	85
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	3 cut(s)	136, 397, 582
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	4 cut(s)	178, 538, 583, 609
TseFI	GTSAC	4 cut(s)	173, 415, 535, 574
TseI	GCWGC	3 cut(s)	268, 371, 607
Tsp45I	GTSAC	4 cut(s)	173, 415, 535, 574
TspDTI	ATGAA	3 cut(s)	42, 236, 398
TspRI	CASTG	4 cut(s)	178, 538, 583, 609
VpaK11BI	GGWCC	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	2 cut(s)	53, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.