Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008308.1

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

8444 .. 9455

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008308.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgcttgttgatcattatctgaacgatatggaatttgtaggctctgccttggatgagctatgcctaagtcccgatcaagaaggcagcagccaaggaggtaggatgggtcgaaggagatacaacgaccaggaagatgattcgatttacaaatccaagaacctgaaagccgaaaggaagagaagagcgaagcttagtgacaggctcctcaagctacgatcattggttcccatcatcacaaatatgaataaagcaactatcgttgaggactcaatcacttatatctatgagctgcagaagaatgtgaacatgctccaggaccagctttttgagatggaagcattgtcttcactggaggtgccggagccaaagccgaggaaagaagaaattgatgctgcagaagagatgaagaaatatgggattcaggcggacgttagtgtgactcagattgatgggaacaaactttggataaaggcggttcttgcgaagaaaagaggtggattcaccaaattgatagaggccatgactgagtttggctttgaactcactgataccagtgtcactacctccaatggagcaatgcttgtttcatcctgtgtcattggattccattgcgatacacatgcagtcctgcaaaccagggaattgatgctggatatcattaatggaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

223

Amino Acids

25.2

Weight (kDa)

5.26

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AciI	CCGC	2 cut(s)	425, 473
AcsI	RAATTY	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	539
AjnI	CCWGG	3 cut(s)	126, 312, 635
AluBI	AGCT	5 cut(s)	58, 190, 211, 289, 322
AluI	AGCT	5 cut(s)	58, 190, 211, 289, 322
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	4 cut(s)	84, 87, 289, 392
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanI	GGYRCC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	96, 99, 276, 379
BccI	CCATC	4 cut(s)	97, 236, 325, 443
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	3 cut(s)	128, 314, 637
BclI	TGATCA	1 cut(s)	10
BfmI	CTRYAG	2 cut(s)	290, 393
BisI	GCNGC	4 cut(s)	85, 88, 290, 393
BlsI	GCNGC	4 cut(s)	86, 89, 291, 394
Bme1390I	CCNGG	3 cut(s)	128, 314, 637
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	4 cut(s)	203, 225, 357, 363
BmrFI	CCNGG	3 cut(s)	128, 314, 637
BmsI	GCATC	2 cut(s)	379, 636
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	2 cut(s)	296, 371
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	48, 91, 371, 636
Bse1I	ACTGG	2 cut(s)	354, 552
Bse3DI	GCAATG	2 cut(s)	582, 607
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	128, 314, 637
BseDI	CCNNGG	4 cut(s)	48, 91, 371, 636
BseGI	GGATG	3 cut(s)	58, 108, 587
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	2 cut(s)	582, 607
BseMII	CTCAG	2 cut(s)	455, 516
BseNI	ACTGG	2 cut(s)	354, 552
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	96, 99, 276, 379
BshFI	GGCC	1 cut(s)	518
BshNI	GGYRCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	10, 73, 215
BspACI	CCGC	2 cut(s)	425, 473
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	454, 517
BspLI	GGNNCC	4 cut(s)	203, 225, 357, 363
BspMAI	CTGCAG	2 cut(s)	294, 397
BspQI	GCTCTTC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	355
BsrDI	GCAATG	2 cut(s)	582, 607
BsrI	ACTGG	2 cut(s)	354, 552
BssECI	CCNNGG	4 cut(s)	48, 91, 371, 636
BssMI	GATC	3 cut(s)	10, 73, 215
BssT1I	CCWWGG	2 cut(s)	48, 91
Bst2UI	CCWGG	3 cut(s)	128, 314, 637
Bst6I	CTCTTC	3 cut(s)	170, 175, 393
BstDEI	CTNAG	4 cut(s)	65, 191, 441, 525
BstF5I	GGATG	3 cut(s)	58, 108, 587
BstKTI	GATC	3 cut(s)	13, 76, 218
BstMBI	GATC	3 cut(s)	10, 73, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 479
BstNI	CCWGG	3 cut(s)	128, 314, 637
BstNSI	RCATGY	2 cut(s)	310, 623
BstSCI	CCNGG	3 cut(s)	126, 312, 635
BstSFI	CTRYAG	2 cut(s)	290, 393
BstV1I	GCAGC	4 cut(s)	96, 99, 276, 379
BstV2I	GAAGAC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	58, 108, 587
BtsIMutI	CAGTG	3 cut(s)	347, 543, 559
Cfr13I	GGNCC	1 cut(s)	316
CviAII	CATG	3 cut(s)	307, 520, 620
DdeI	CTNAG	4 cut(s)	65, 191, 441, 525
DpnI	GATC	3 cut(s)	12, 75, 217
DpnII	GATC	3 cut(s)	10, 73, 215
Eam1104I	CTCTTC	3 cut(s)	170, 175, 393
EarI	CTCTTC	3 cut(s)	170, 175, 393
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	2 cut(s)	48, 91
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	126, 312, 635
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	2 cut(s)	48, 91
ErhI	CCWWGG	2 cut(s)	48, 91
FaeI	CATG	3 cut(s)	310, 523, 623
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	306, 519, 619
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	85, 88, 290, 393
FokI	GGATG	3 cut(s)	65, 115, 574
Fsp4HI	GCNGC	4 cut(s)	85, 88, 290, 393
GluI	GCNGC	4 cut(s)	85, 88, 290, 393
GsuI	CTGGAG	2 cut(s)	296, 371
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	3 cut(s)	310, 523, 623
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	6 cut(s)	137, 266, 418, 439, 498, 603
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	21, 444
Hpy188III	TCNNGA	2 cut(s)	71, 77
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	74, 105
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	292, 395, 623, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 479
HpyF3I	CTNAG	4 cut(s)	65, 191, 441, 525
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	310, 523, 623
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 73, 215
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	4 cut(s)	207, 315, 361, 572
Lsp1109I	GCAGC	4 cut(s)	96, 99, 276, 379
LweI	GCATC	2 cut(s)	379, 636
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	194, 436, 556
MalI	GATC	3 cut(s)	12, 75, 217
MboI	GATC	3 cut(s)	10, 73, 215
MboII	GAAGA	9 cut(s)	143, 187, 192, 307, 336, 392, 410, 418, 496
MluCI	AATT	4 cut(s)	32, 384, 506, 641
MlyI	GAGTC	2 cut(s)	260, 433
MnlI	CCTC	8 cut(s)	89, 215, 256, 346, 366, 485, 508, 574
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	3 cut(s)	128, 314, 637
MvaI	CCWGG	3 cut(s)	128, 314, 637
MwoI	GCNNNNNNNGC	2 cut(s)	208, 479
NdeII	GATC	3 cut(s)	10, 73, 215
NlaIII	CATG	3 cut(s)	310, 523, 623
NlaIV	GGNNCC	4 cut(s)	203, 225, 357, 363
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	3 cut(s)	194, 436, 556
NspI	RCATGY	2 cut(s)	310, 623
PciSI	GCTCTTC	1 cut(s)	175
PfeI	GAWTC	4 cut(s)	137, 418, 498, 603
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	86, 89, 291, 394
PleI	GAGTC	2 cut(s)	260, 433
PpsI	GAGTC	2 cut(s)	260, 433
PshBI	ATTAAT	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	126, 312, 635
PspGI	CCWGG	3 cut(s)	126, 312, 635
PspN4I	GGNNCC	4 cut(s)	203, 225, 357, 363
PspPI	GGNCC	1 cut(s)	316
PstI	CTGCAG	2 cut(s)	294, 397
RseI	CAYNNNNRTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	4 cut(s)	85, 88, 290, 393
Sau3AI	GATC	3 cut(s)	10, 73, 215
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	260, 433
ScrFI	CCNGG	3 cut(s)	128, 314, 637
SfaNI	GCATC	2 cut(s)	379, 636
SfcI	CTRYAG	2 cut(s)	290, 393
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	32, 384, 506, 641
SsiI	CCGC	2 cut(s)	425, 473
StyD4I	CCNGG	3 cut(s)	126, 312, 635
StyI	CCWWGG	2 cut(s)	48, 91
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	109, 140
TasI	AATT	4 cut(s)	32, 384, 506, 641
TfiI	GAWTC	4 cut(s)	137, 418, 498, 603
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	3 cut(s)	354, 550, 559
TseFI	GTSAC	3 cut(s)	194, 436, 556
TseI	GCWGC	4 cut(s)	84, 87, 289, 392
Tsp45I	GTSAC	3 cut(s)	194, 436, 556
TspDTI	ATGAA	3 cut(s)	257, 419, 576
TspRI	CASTG	3 cut(s)	354, 550, 559
VpaK11BI	GGWCC	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	310, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.