Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

19554242 .. 19554811

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACTAAAGAAACCATTATTGAGGATTCCATCACTTACATTAAGGAGCTGCAGACGAATGTGAATATCTTGCAGGAGCAGCTATTCAAGATGGAAGCATCAGCGCAAGAGGCGCTAGAGCTGAGGAAAGATGAAGTTGATGCTGCAGAAGAGATGAAGAAATTTGGGATTCAGATAGGGGTTGATGTGGCTCAGATTGATGGGAATAAACTTTGGGTAAAGGCGATTATTGAGAAGAAAAGAGGTGGCTTCACTAAACTGGTGGAGGCCATGACGTACTTTGGCTTTGAACTCACTGATACCAATATCATAACCTCCAATGGAGCAATGGTTGTTTCATCCATTCTAACAGTAAGTCCTGAAAAACCGAAGTACATCTATTATACGGTGATGCTAAGTAAGTACAAATGCATATATAGTCATAGTCTCATAGATGGAGTATACTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

150

Amino Acids

17.0

Weight (kDa)

5.11

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	3 cut(s)	278, 374, 404
AgsI	TTSAA	2 cut(s)	88, 290
AluBI	AGCT	3 cut(s)	49, 82, 121
AluI	AGCT	3 cut(s)	49, 82, 121
Alw26I	GTCTC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	49, 79, 143
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	106, 115
AsuHPI	GGTGA	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	36, 91, 130
BccI	CCATC	4 cut(s)	38, 85, 194, 428
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	50, 144
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	3 cut(s)	50, 80, 144
BlsI	GCNGC	3 cut(s)	51, 81, 145
BmsI	GCATC	3 cut(s)	107, 130, 381
Bpu10I	CCTNAGC	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	113, 206
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	36, 91, 130
BshFI	GGCC	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	114, 205
BspMAI	CTGCAG	2 cut(s)	54, 148
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	264
BssNAI	GTATAC	1 cut(s)	442
Bst1107I	GTATAC	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	352, 388
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	122, 192, 395
BstF5I	GGATG	1 cut(s)	338
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	106, 115
BstMAI	GTCTC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 110, 112
BstSFI	CTRYAG	2 cut(s)	50, 144
BstV1I	GCAGC	3 cut(s)	36, 91, 130
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	106, 115
Csp6I	GTAC	3 cut(s)	277, 373, 403
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	49, 82, 121, 191, 249, 269, 285
CviKI_1	RGCY	7 cut(s)	49, 82, 121, 191, 249, 269, 285
CviQI	GTAC	3 cut(s)	277, 373, 403
DdeI	CTNAG	3 cut(s)	122, 192, 395
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	1 cut(s)	274
FaiI	YATR	9 cut(s)	272, 311, 384, 413, 415, 417, 423, 431, 442
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	50, 80, 144
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	50, 80, 144
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	105, 114
GluI	GCNGC	3 cut(s)	50, 80, 144
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	106, 115
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	104, 113
HinP1I	GCGC	2 cut(s)	104, 113
HinfI	GANTC	2 cut(s)	26, 169
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	174, 195
Hpy188III	TCNNGA	2 cut(s)	88, 359
Hpy8I	GTNNAC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	352, 388
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	52, 73, 146, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 110, 112
HpyF3I	CTNAG	3 cut(s)	122, 192, 395
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	104, 113
LmnI	GCTCC	3 cut(s)	46, 76, 323
LpnPI	CCDG	3 cut(s)	59, 245, 372
Lsp1109I	GCAGC	3 cut(s)	36, 91, 130
LweI	GCATC	3 cut(s)	107, 130, 381
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	275
MboII	GAAGA	3 cut(s)	161, 169, 247
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	6 cut(s)	16, 103, 117, 236, 259, 325
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	79, 110, 112
NlaIII	CATG	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	26, 169
PkrI	GCNGC	3 cut(s)	51, 81, 145
PstI	CTGCAG	2 cut(s)	54, 148
RsaI	GTAC	3 cut(s)	278, 374, 404
RsaNI	GTAC	3 cut(s)	277, 373, 403
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	50, 80, 144
SetI	ASST	6 cut(s)	51, 84, 123, 247, 278, 317
SfaNI	GCATC	3 cut(s)	107, 130, 381
SfcI	CTRYAG	2 cut(s)	50, 144
SgeI	CNNG	8 cut(s)	82, 86, 100, 119, 128, 272, 283, 371
Sse9I	AATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	352, 388
TaiI	ACGT	1 cut(s)	278
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	372, 402
TfiI	GAWTC	2 cut(s)	26, 169
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	3 cut(s)	49, 79, 143
TspDTI	ATGAA	3 cut(s)	147, 170, 327
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.