Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

19690297 .. 19691573

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAATTTGTAGGTTCTGCATTAAGTGAATTAGGCACAACTGATCAACAAAAACCAGGCTGCAGAGGAGGCAGGATGTGGGGTCGAAGGAGACACCAAGAAGACGATTCATCATTCAAATCGAAAAACCTCCACGCCGAGAGGAGGAGAAGGCAGAAGCTCGGTGATAGGCTACTAATACTGCGTTCATTAGTCCCAATAATTACAAATATGACTAAAGAAACCATTATTGAGGATTCCATCACTTACATTAAGGAGCTGCAGACGAATGTGAATATCTTGCAGGAGCAGCTATTCAAGATGGAAGCATCAGCGCAAGAGGCGCTAGAGCTGAGGAAAGATGAAGTTGATGCTGCAGAAGAGATGAAGAAATTTGGGATTCAGATAGGGGTTGATGTGGCTCAGATTGATGGGAATAAACTTTGGGTAAAGGCGATTATTGAGAAGAAAAGAGGTGGCTTCACTAAACTGGTGGAGGCCATGACGTACTTTGGCTTTGAACTCACTGATACCAATATCATAACCTCCAATGGAGCAATGGTTGTTTCATCCGTTCTAACAGGATTTCATTGTGATACGCTTCAGGTCGAGCAAACCAGGGAACTTATCCTAGAGATCGTTAACGGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

210

Amino Acids

23.79

Weight (kDa)

6.01

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	43 - 88	2.4e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	5, 371
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	118, 298, 500
AjnI	CCWGG	2 cut(s)	55, 596
AluBI	AGCT	4 cut(s)	160, 259, 292, 331
AluI	AGCT	4 cut(s)	160, 259, 292, 331
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	60, 259, 289, 353
ApoI	RAATTY	2 cut(s)	5, 371
AspLEI	GCGC	2 cut(s)	316, 325
AsuHPI	GGTGA	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	47, 246, 301, 340
BccI	CCATC	3 cut(s)	248, 295, 404
BciT130I	CCWGG	2 cut(s)	57, 598
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	326, 611
BfmI	CTRYAG	3 cut(s)	61, 260, 354
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	4 cut(s)	61, 260, 290, 354
BlsI	GCNGC	4 cut(s)	62, 261, 291, 355
Bme1390I	CCNGG	2 cut(s)	57, 598
BmrFI	CCNGG	2 cut(s)	57, 598
BmsI	GCATC	2 cut(s)	317, 340
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	57, 598
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	2 cut(s)	81, 548
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	323, 416
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	3 cut(s)	81, 157, 160
BseXI	GCAGC	4 cut(s)	47, 246, 301, 340
BshFI	GGCC	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	479
Bsp143I	GATC	2 cut(s)	43, 615
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	324, 415
BspMAI	CTGCAG	3 cut(s)	65, 264, 358
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	2 cut(s)	43, 615
Bst2UI	CCWGG	2 cut(s)	57, 598
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	332, 402
BstF5I	GGATG	2 cut(s)	81, 548
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	316, 325
BstKTI	GATC	2 cut(s)	46, 618
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	43, 615
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 289, 320, 322
BstNI	CCWGG	2 cut(s)	57, 598
BstSCI	CCNGG	2 cut(s)	55, 596
BstSFI	CTRYAG	3 cut(s)	61, 260, 354
BstV1I	GCAGC	4 cut(s)	47, 246, 301, 340
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	81, 548
BtsIMutI	CAGTG	1 cut(s)	504
CfoI	GCGC	2 cut(s)	316, 325
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	481
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	332, 402
DpnI	GATC	2 cut(s)	45, 617
DpnII	GATC	2 cut(s)	43, 615
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	55, 596
FaeI	CATG	1 cut(s)	484
FaiI	YATR	5 cut(s)	212, 482, 521, 629, 631
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	61, 260, 290, 354
FokI	GGATG	2 cut(s)	88, 535
Fsp4HI	GCNGC	4 cut(s)	61, 260, 290, 354
FspBI	CTAG	2 cut(s)	326, 611
GlaI	GCGC	2 cut(s)	315, 324
GluI	GCNGC	4 cut(s)	61, 260, 290, 354
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	479
HhaI	GCGC	2 cut(s)	316, 325
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	2 cut(s)	314, 323
HinP1I	GCGC	2 cut(s)	314, 323
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	3 cut(s)	107, 236, 379
HpaI	GTTAAC	1 cut(s)	622
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	2 cut(s)	384, 405
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	81, 144
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	5 cut(s)	20, 63, 262, 283, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 289, 320, 322
HpyF3I	CTNAG	2 cut(s)	332, 402
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	2 cut(s)	314, 323
Ksp22I	TGATCA	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	43, 615
LmnI	GCTCC	3 cut(s)	256, 286, 533
LpnPI	CCDG	9 cut(s)	42, 58, 69, 269, 455, 546, 569, 583, 610
Lsp1109I	GCAGC	4 cut(s)	47, 246, 301, 340
LweI	GCATC	2 cut(s)	317, 340
MaeI	CTAG	2 cut(s)	326, 611
MaeII	ACGT	1 cut(s)	485
MalI	GATC	2 cut(s)	45, 617
MboI	GATC	2 cut(s)	43, 615
MboII	GAAGA	4 cut(s)	113, 371, 379, 457
MluCI	AATT	4 cut(s)	5, 29, 201, 371
MseI	TTAA	3 cut(s)	23, 252, 621
MspR9I	CCNGG	2 cut(s)	57, 598
MvaI	CCWGG	2 cut(s)	57, 598
MwoI	GCNNNNNNNGC	4 cut(s)	69, 289, 320, 322
NdeII	GATC	2 cut(s)	43, 615
NlaIII	CATG	1 cut(s)	484
NmeAIII	GCCGAG	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	107, 236, 379
PkrI	GCNGC	4 cut(s)	62, 261, 291, 355
Psp6I	CCWGG	2 cut(s)	55, 596
PspGI	CCWGG	2 cut(s)	55, 596
PstI	CTGCAG	3 cut(s)	65, 264, 358
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	23, 252, 621
SatI	GCNGC	4 cut(s)	61, 260, 290, 354
Sau3AI	GATC	2 cut(s)	43, 615
ScrFI	CCNGG	2 cut(s)	57, 598
SfaNI	GCATC	2 cut(s)	317, 340
SfcI	CTRYAG	3 cut(s)	61, 260, 354
Sse9I	AATT	4 cut(s)	5, 29, 201, 371
SspMI	CTAG	2 cut(s)	326, 611
StyD4I	CCNGG	2 cut(s)	55, 596
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	85, 122, 588
TasI	AATT	4 cut(s)	5, 29, 201, 371
TfiI	GAWTC	3 cut(s)	107, 236, 379
Tru1I	TTAA	3 cut(s)	23, 252, 621
Tru9I	TTAA	3 cut(s)	23, 252, 621
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	4 cut(s)	60, 259, 289, 353
TspDTI	ATGAA	6 cut(s)	99, 177, 357, 380, 537, 557
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	1 cut(s)	511
XapI	RAATTY	2 cut(s)	5, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	2 cut(s)	326, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.