Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

4049732 .. 4050730

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAATTTGTAGGCTCTGCCTTGGATGAGCTATGCCTAAGTCCTGATCAAGAAGGCAGCAGCCAACGAGGTAGGATGGGTCGAAGGAGATACAACGACGAGGAAGATGATTCGATTTACAAATCCAAGAACCTGAAAGCCGAAAGGAAGAGAAGAGCGAAGCTTAGTGACAGGCTCCTCAAGCTACGATCATTGGTTCCCATCATCACAAATATGAATAAAGCAACTATCGTTGAGGACTCAATCACTTATATCTATGAGCTGCAGAAGAATGTGAACATGCTCCAGGACCAGCTCTTTGAGATGGAAGCATTGTCTTCACTGGAGGTGCCGGAGCCAAAGCCGAGGAAAGAAGAAATTGATGCTGCAGAAGAGATGAAGAAATATGGGATTCAGGCGGAGGTTAGTGTGACTCAGATTGATGGGAACAAACTTTGGATAAAGGCGGTTCTTGCGAAGAAAAGAGGTGGATTCACCAAATTGATAGAGGCCATGACTGAGTTTGGCTTTGAACTCACTGATACCAGTGTCACTACCTCCAATGGAGCAATGCTTGTTTCATCCTGTGTCATTGGATTCCATTGCGATACACTTGCAGTCGAGCAAACCAGGGAATTGATGCTGGATATCATTAATGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

214

Amino Acids

24.21

Weight (kDa)

5.21

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	42 - 89	3.4e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	2 cut(s)	398, 446
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	2 cut(s)	285, 608
AluBI	AGCT	5 cut(s)	31, 163, 184, 262, 295
AluI	AGCT	5 cut(s)	31, 163, 184, 262, 295
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	57, 60, 262, 365
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AseI	ATTAAT	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	4 cut(s)	69, 72, 249, 352
BccI	CCATC	4 cut(s)	70, 209, 298, 416
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	2 cut(s)	287, 610
BclI	TGATCA	1 cut(s)	46
BfmI	CTRYAG	2 cut(s)	263, 366
BisI	GCNGC	4 cut(s)	58, 61, 263, 366
BlsI	GCNGC	4 cut(s)	59, 62, 264, 367
Bme1390I	CCNGG	2 cut(s)	287, 610
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	4 cut(s)	176, 198, 330, 336
BmrFI	CCNGG	2 cut(s)	287, 610
BmsI	GCATC	2 cut(s)	352, 609
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	269, 344
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	21, 344, 609
Bse1I	ACTGG	2 cut(s)	327, 525
Bse3DI	GCAATG	2 cut(s)	555, 580
BseBI	CCWGG	2 cut(s)	287, 610
BseDI	CCNNGG	3 cut(s)	21, 344, 609
BseGI	GGATG	3 cut(s)	31, 81, 560
BseMI	GCAATG	2 cut(s)	555, 580
BseMII	CTCAG	2 cut(s)	428, 489
BseNI	ACTGG	2 cut(s)	327, 525
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	69, 72, 249, 352
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	332
BsnI	GGCC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	46, 188
BspACI	CCGC	2 cut(s)	398, 446
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	2 cut(s)	427, 490
BspLI	GGNNCC	4 cut(s)	176, 198, 330, 336
BspMAI	CTGCAG	2 cut(s)	267, 370
BspQI	GCTCTTC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	555, 580
BsrI	ACTGG	2 cut(s)	327, 525
BssECI	CCNNGG	3 cut(s)	21, 344, 609
BssMI	GATC	2 cut(s)	46, 188
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	287, 610
Bst6I	CTCTTC	3 cut(s)	143, 148, 366
BstDEI	CTNAG	4 cut(s)	38, 164, 414, 498
BstF5I	GGATG	3 cut(s)	31, 81, 560
BstKTI	GATC	2 cut(s)	49, 191
BstMBI	GATC	2 cut(s)	46, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 452
BstNI	CCWGG	2 cut(s)	287, 610
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	285, 608
BstSFI	CTRYAG	2 cut(s)	263, 366
BstV1I	GCAGC	4 cut(s)	69, 72, 249, 352
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	31, 81, 560
BtsIMutI	CAGTG	3 cut(s)	320, 516, 532
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	2 cut(s)	280, 493
DdeI	CTNAG	4 cut(s)	38, 164, 414, 498
DpnI	GATC	2 cut(s)	48, 190
DpnII	GATC	2 cut(s)	46, 188
Eam1104I	CTCTTC	3 cut(s)	143, 148, 366
EarI	CTCTTC	3 cut(s)	143, 148, 366
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	285, 608
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	283, 496
FaiI	YATR	8 cut(s)	34, 215, 252, 258, 281, 387, 494, 643
FatI	CATG	2 cut(s)	279, 492
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	58, 61, 263, 366
FokI	GGATG	3 cut(s)	38, 88, 547
Fsp4HI	GCNGC	4 cut(s)	58, 61, 263, 366
GluI	GCNGC	4 cut(s)	58, 61, 263, 366
GsuI	CTGGAG	2 cut(s)	269, 344
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	283, 496
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	6 cut(s)	110, 239, 391, 412, 471, 576
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	44, 50
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	47, 78
HpyCH4V	TGCA	3 cut(s)	265, 368, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 452
HpyF3I	CTNAG	4 cut(s)	38, 164, 414, 498
Hsp92II	CATG	2 cut(s)	283, 496
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 188
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	4 cut(s)	180, 288, 334, 545
Lsp1109I	GCAGC	4 cut(s)	69, 72, 249, 352
LweI	GCATC	2 cut(s)	352, 609
MaeIII	GTNAC	3 cut(s)	167, 409, 529
MalI	GATC	2 cut(s)	48, 190
MboI	GATC	2 cut(s)	46, 188
MboII	GAAGA	9 cut(s)	116, 160, 165, 280, 309, 365, 383, 391, 469
MluCI	AATT	4 cut(s)	5, 357, 479, 614
MlyI	GAGTC	2 cut(s)	233, 406
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	287, 610
MvaI	CCWGG	2 cut(s)	287, 610
MwoI	GCNNNNNNNGC	2 cut(s)	181, 452
NdeII	GATC	2 cut(s)	46, 188
NlaIII	CATG	2 cut(s)	283, 496
NlaIV	GGNNCC	4 cut(s)	176, 198, 330, 336
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	167, 409, 529
NspI	RCATGY	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	110, 391, 471, 576
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	59, 62, 264, 367
PleI	GAGTC	2 cut(s)	233, 406
PpsI	GAGTC	2 cut(s)	233, 406
PshBI	ATTAAT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	285, 608
PspGI	CCWGG	2 cut(s)	285, 608
PspN4I	GGNNCC	4 cut(s)	176, 198, 330, 336
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	2 cut(s)	267, 370
RseI	CAYNNNNRTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	4 cut(s)	58, 61, 263, 366
Sau3AI	GATC	2 cut(s)	46, 188
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	233, 406
ScrFI	CCNGG	2 cut(s)	287, 610
SfaNI	GCATC	2 cut(s)	352, 609
SfcI	CTRYAG	2 cut(s)	263, 366
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	5, 357, 479, 614
SsiI	CCGC	2 cut(s)	398, 446
StyD4I	CCNGG	2 cut(s)	285, 608
StyI	CCWWGG	1 cut(s)	21
TaqI	TCGA	3 cut(s)	82, 113, 600
TasI	AATT	4 cut(s)	5, 357, 479, 614
TfiI	GAWTC	4 cut(s)	110, 391, 471, 576
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	3 cut(s)	327, 523, 532
TseFI	GTSAC	3 cut(s)	167, 409, 529
TseI	GCWGC	4 cut(s)	57, 60, 262, 365
Tsp45I	GTSAC	3 cut(s)	167, 409, 529
TspDTI	ATGAA	3 cut(s)	230, 392, 549
TspRI	CASTG	3 cut(s)	327, 523, 532
VpaK11BI	GGWCC	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.