Transcription factor DYSFUNCTIONAL TAPETUM
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21330 |
| fragaria_vesca | FvH4_3g03170 |
| malus_domestica | MD10G1309600.v1.1 |
| prunus_persica | Prupe.4G030600_v2.0.a1 |
| pyrus_communis | pycom05g30620 pycom10g26100 |
| rosa_chinensis | RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741 |
| rosa_multiflora | Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026 |
| rosa_roxburghii | Rroxscaffold_1G00053450 Rroxscaffold_1G00054300 |
| rosa_rugosa | Rorug05G0088200 |
| rosa_samantha | Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500 |
| rosa_wichuraiana | Rw5G004030 Rw5G016340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 307 |
| AcsI | RAATTY | 2 cut(s) | 330, 356 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgsI | TTSAA | 3 cut(s) | 218, 485, 569 |
| AluBI | AGCT | 2 cut(s) | 244, 277 |
| AluI | AGCT | 2 cut(s) | 244, 277 |
| Alw26I | GTCTC | 1 cut(s) | 127 |
| AoxI | GGCC | 1 cut(s) | 462 |
| ApeKI | GCWGC | 1 cut(s) | 244 |
| ApoI | RAATTY | 2 cut(s) | 330, 356 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 263, 295 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 1 cut(s) | 154 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 486, 519 |
| BanI | GGYRCC | 1 cut(s) | 307 |
| BauI | CACGAG | 1 cut(s) | 239 |
| BbsI | GAAGAC | 1 cut(s) | 257 |
| BbvI | GCAGC | 1 cut(s) | 231 |
| BccI | CCATC | 4 cut(s) | 61, 233, 389, 451 |
| BceAI | ACGGC | 1 cut(s) | 152 |
| BcoDI | GTCTC | 1 cut(s) | 127 |
| BfaI | CTAG | 1 cut(s) | 596 |
| BfmI | CTRYAG | 2 cut(s) | 245, 339 |
| BisI | GCNGC | 1 cut(s) | 245 |
| BlsI | GCNGC | 1 cut(s) | 246 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmiI | GGNNCC | 2 cut(s) | 180, 309 |
| BmsI | GCATC | 3 cut(s) | 211, 302, 582 |
| BpiI | GAAGAC | 1 cut(s) | 257 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BsaAI | YACGTR | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 582 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse1I | ACTGG | 1 cut(s) | 498 |
| Bse3DI | GCAATG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 2 cut(s) | 21, 582 |
| BseGI | GGATG | 2 cut(s) | 31, 72 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMI | GCAATG | 1 cut(s) | 528 |
| BseMII | CTCAG | 2 cut(s) | 160, 401 |
| BseNI | ACTGG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 3 cut(s) | 142, 145, 149 |
| BseXI | GCAGC | 1 cut(s) | 231 |
| BshFI | GGCC | 1 cut(s) | 464 |
| BshNI | GGYRCC | 1 cut(s) | 307 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmAI | GTCTC | 1 cut(s) | 127 |
| BsmBI | CGTCTC | 1 cut(s) | 127 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 464 |
| Bsp143I | GATC | 1 cut(s) | 600 |
| BspANI | GGCC | 1 cut(s) | 464 |
| BspCNI | CTCAG | 2 cut(s) | 159, 400 |
| BspLI | GGNNCC | 2 cut(s) | 180, 309 |
| BspMAI | CTGCAG | 2 cut(s) | 249, 343 |
| BspT107I | GGYRCC | 1 cut(s) | 307 |
| BsrDI | GCAATG | 1 cut(s) | 528 |
| BsrI | ACTGG | 1 cut(s) | 498 |
| BssECI | CCNNGG | 2 cut(s) | 21, 582 |
| BssMI | GATC | 1 cut(s) | 600 |
| BssSI | CACGAG | 1 cut(s) | 239 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 582 |
| Bst2BI | CACGAG | 1 cut(s) | 239 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 339 |
| BstBAI | YACGTR | 1 cut(s) | 170 |
| BstDEI | CTNAG | 2 cut(s) | 146, 387 |
| BstF5I | GGATG | 2 cut(s) | 31, 72 |
| BstKTI | GATC | 1 cut(s) | 603 |
| BstMAI | GTCTC | 1 cut(s) | 127 |
| BstMBI | GATC | 1 cut(s) | 600 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 470 |
| BstSFI | CTRYAG | 2 cut(s) | 245, 339 |
| BstV1I | GCAGC | 1 cut(s) | 231 |
| BstV2I | GAAGAC | 1 cut(s) | 257 |
| BsuRI | GGCC | 1 cut(s) | 464 |
| BtsCI | GGATG | 2 cut(s) | 31, 72 |
| BtsIMutI | CAGTG | 3 cut(s) | 154, 489, 505 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| CviAII | CATG | 2 cut(s) | 466, 544 |
| CviJI | RGCY | 6 cut(s) | 14, 244, 277, 316, 464, 480 |
| CviKI_1 | RGCY | 6 cut(s) | 14, 244, 277, 316, 464, 480 |
| DdeI | CTNAG | 2 cut(s) | 146, 387 |
| DpnI | GATC | 1 cut(s) | 602 |
| DpnII | GATC | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 339 |
| EarI | CTCTTC | 2 cut(s) | 297, 339 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 582 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 582 |
| EcoT22I | ATGCAT | 1 cut(s) | 38 |
| ErhI | CCWWGG | 2 cut(s) | 21, 582 |
| Esp3I | CGTCTC | 1 cut(s) | 127 |
| FaeI | CATG | 2 cut(s) | 469, 547 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 2 cut(s) | 465, 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 245 |
| FokI | GGATG | 2 cut(s) | 38, 79 |
| Fsp4HI | GCNGC | 1 cut(s) | 245 |
| FspBI | CTAG | 1 cut(s) | 596 |
| GluI | GCNGC | 1 cut(s) | 245 |
| HaeIII | GGCC | 1 cut(s) | 464 |
| Hin1II | CATG | 2 cut(s) | 469, 547 |
| HinfI | GANTC | 4 cut(s) | 79, 364, 385, 549 |
| HphI | GGTGA | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 3 cut(s) | 152, 259, 447 |
| Hpy188I | TCNGA | 3 cut(s) | 78, 298, 390 |
| Hpy8I | GTNNAC | 3 cut(s) | 152, 259, 447 |
| Hpy99I | CGWCG | 1 cut(s) | 98 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyCH4IV | ACGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 173, 247, 341 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 470 |
| HpyF3I | CTNAG | 2 cut(s) | 146, 387 |
| HpySE526I | ACGT | 1 cut(s) | 169 |
| Hsp92II | CATG | 2 cut(s) | 469, 547 |
| Kzo9I | GATC | 1 cut(s) | 600 |
| LmnI | GCTCC | 1 cut(s) | 518 |
| LpnPI | CCDG | 5 cut(s) | 287, 324, 353, 357, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 231 |
| LweI | GCATC | 3 cut(s) | 211, 302, 582 |
| MaeI | CTAG | 1 cut(s) | 596 |
| MaeII | ACGT | 1 cut(s) | 169 |
| MaeIII | GTNAC | 3 cut(s) | 80, 382, 502 |
| MalI | GATC | 1 cut(s) | 602 |
| MboI | GATC | 1 cut(s) | 600 |
| MboII | GAAGA | 9 cut(s) | 230, 262, 311, 314, 331, 338, 356, 364, 442 |
| MluCI | AATT | 4 cut(s) | 29, 330, 356, 587 |
| MlyI | GAGTC | 2 cut(s) | 88, 379 |
| Mph1103I | ATGCAT | 1 cut(s) | 38 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 470 |
| NdeII | GATC | 1 cut(s) | 600 |
| NlaIII | CATG | 2 cut(s) | 469, 547 |
| NlaIV | GGNNCC | 2 cut(s) | 180, 309 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 3 cut(s) | 80, 382, 502 |
| NsiI | ATGCAT | 1 cut(s) | 38 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 2 cut(s) | 364, 549 |
| PkrI | GCNGC | 1 cut(s) | 246 |
| PleI | GAGTC | 2 cut(s) | 87, 379 |
| PpsI | GAGTC | 2 cut(s) | 87, 379 |
| Ppu21I | YACGTR | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 2 cut(s) | 180, 309 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PstI | CTGCAG | 2 cut(s) | 249, 343 |
| RseI | CAYNNNNRTG | 1 cut(s) | 87 |
| SatI | GCNGC | 1 cut(s) | 245 |
| Sau3AI | GATC | 1 cut(s) | 600 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SchI | GAGTC | 2 cut(s) | 88, 379 |
| SetI | ASST | 7 cut(s) | 52, 117, 172, 246, 279, 442, 512 |
| SfaNI | GCATC | 3 cut(s) | 211, 302, 582 |
| SfcI | CTRYAG | 2 cut(s) | 245, 339 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 87 |
| SmlI | CTYRAG | 1 cut(s) | 425 |
| SmoI | CTYRAG | 1 cut(s) | 425 |
| Sse9I | AATT | 4 cut(s) | 29, 330, 356, 587 |
| SspMI | CTAG | 1 cut(s) | 596 |
| StyI | CCWWGG | 2 cut(s) | 21, 582 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaiI | ACGT | 1 cut(s) | 172 |
| TaqI | TCGA | 1 cut(s) | 282 |
| TasI | AATT | 4 cut(s) | 29, 330, 356, 587 |
| TfiI | GAWTC | 2 cut(s) | 364, 549 |
| TscAI | CASTG | 3 cut(s) | 154, 496, 505 |
| TseFI | GTSAC | 3 cut(s) | 80, 382, 502 |
| TseI | GCWGC | 1 cut(s) | 244 |
| Tsp45I | GTSAC | 3 cut(s) | 80, 382, 502 |
| TspDTI | ATGAA | 5 cut(s) | 42, 212, 323, 365, 522 |
| TspRI | CASTG | 3 cut(s) | 154, 496, 505 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XapI | RAATTY | 2 cut(s) | 330, 356 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 1 cut(s) | 596 |
| Zsp2I | ATGCAT | 1 cut(s) | 38 |