Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Forward (+)

19738604 .. 19739639

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACTACTGCAATCAATATCTGAATGATATGGAATTTGTAGGTTCTGCATTAAGTGAATTAGGCACAACTGATCAACAAAAACCAGGCTGCAGAGGAGGCAGGATGTGGGGTCGAAGGAGACACCAAGAAGACGATTCATCATTCAAATCGAAAAACCTCCACGCCGAGAGGAGGAGAAGGCAGAAGCTCGGTGATAGGCTACTAATACTGCGTTCATTAGTCCCAATAATTACAAATATGACTAAAGAAACCATTATTGAGGATTCCATCACTTACATTAAGGAGCTGCAGACGAATGTGAATATCTTGCAGGAGCAGCTATTCAAGATGGAAGCATCAGCGCAAGAGGCGCTAGAGCTGAGGAAAGATGAAGTTGATGCTGCAGAAGAGATGAAGAAATTTGGGATTCAGATAGGGGTTGATGTGGCTCAGATTGATGGGAATAAACTTTGGGTAAAGGCGATTATTGAGAAGAAAAGAGGTGGCTTCACTAAACTGGTGGAGGCCATGACGTACTTTGGCTTTGAACTCACTGATACCAATATCATAACCTCCAATGGAGCAATGGTTGTTTCATCCGTTCTAACAGGATTTCATTGTGATACGCTTCAGGTCGAGCAAACCAGGGAACTTATCCTAGAGATCGTTAACGGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

220

Amino Acids

25.05

Weight (kDa)

5.56

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	53 - 98	2.6e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	35, 401
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	148, 328, 530
AjnI	CCWGG	2 cut(s)	85, 626
AluBI	AGCT	4 cut(s)	190, 289, 322, 361
AluI	AGCT	4 cut(s)	190, 289, 322, 361
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	4 cut(s)	90, 289, 319, 383
ApoI	RAATTY	2 cut(s)	35, 401
AspLEI	GCGC	2 cut(s)	346, 355
AsuHPI	GGTGA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	77, 276, 331, 370
BccI	CCATC	3 cut(s)	278, 325, 434
BciT130I	CCWGG	2 cut(s)	87, 628
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	356, 641
BfmI	CTRYAG	3 cut(s)	91, 290, 384
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	4 cut(s)	91, 290, 320, 384
BlsI	GCNGC	4 cut(s)	92, 291, 321, 385
Bme1390I	CCNGG	2 cut(s)	87, 628
BmrFI	CCNGG	2 cut(s)	87, 628
BmsI	GCATC	2 cut(s)	347, 370
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	627
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	87, 628
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	2 cut(s)	111, 578
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	353, 446
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	3 cut(s)	111, 187, 190
BseXI	GCAGC	4 cut(s)	77, 276, 331, 370
BshFI	GGCC	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	509
Bsp143I	GATC	2 cut(s)	73, 645
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	2 cut(s)	354, 445
BspMAI	CTGCAG	3 cut(s)	95, 294, 388
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	2 cut(s)	73, 645
Bst2UI	CCWGG	2 cut(s)	87, 628
Bst6I	CTCTTC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	362, 432
BstF5I	GGATG	2 cut(s)	111, 578
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	346, 355
BstKTI	GATC	2 cut(s)	76, 648
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	73, 645
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 319, 350, 352
BstNI	CCWGG	2 cut(s)	87, 628
BstSCI	CCNGG	2 cut(s)	85, 626
BstSFI	CTRYAG	3 cut(s)	91, 290, 384
BstV1I	GCAGC	4 cut(s)	77, 276, 331, 370
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	111, 578
BtsIMutI	CAGTG	1 cut(s)	534
CfoI	GCGC	2 cut(s)	346, 355
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	511
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	362, 432
DpnI	GATC	2 cut(s)	75, 647
DpnII	GATC	2 cut(s)	73, 645
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	85, 626
FaeI	CATG	1 cut(s)	514
FaiI	YATR	6 cut(s)	32, 242, 512, 551, 659, 661
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	91, 290, 320, 384
FokI	GGATG	2 cut(s)	118, 565
Fsp4HI	GCNGC	4 cut(s)	91, 290, 320, 384
FspBI	CTAG	2 cut(s)	356, 641
GlaI	GCGC	2 cut(s)	345, 354
GluI	GCNGC	4 cut(s)	91, 290, 320, 384
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	509
HhaI	GCGC	2 cut(s)	346, 355
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	2 cut(s)	344, 353
HinP1I	GCGC	2 cut(s)	344, 353
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	137, 266, 409
HpaI	GTTAAC	1 cut(s)	652
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	24, 414, 435
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	2 cut(s)	111, 174
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	6 cut(s)	12, 50, 93, 292, 313, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 319, 350, 352
HpyF3I	CTNAG	2 cut(s)	362, 432
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	2 cut(s)	344, 353
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	73, 645
LmnI	GCTCC	3 cut(s)	286, 316, 563
LpnPI	CCDG	9 cut(s)	72, 88, 99, 299, 485, 576, 599, 613, 640
Lsp1109I	GCAGC	4 cut(s)	77, 276, 331, 370
LweI	GCATC	2 cut(s)	347, 370
MaeI	CTAG	2 cut(s)	356, 641
MaeII	ACGT	1 cut(s)	515
MalI	GATC	2 cut(s)	75, 647
MboI	GATC	2 cut(s)	73, 645
MboII	GAAGA	4 cut(s)	143, 401, 409, 487
MluCI	AATT	4 cut(s)	35, 59, 231, 401
MseI	TTAA	3 cut(s)	53, 282, 651
MspR9I	CCNGG	2 cut(s)	87, 628
MvaI	CCWGG	2 cut(s)	87, 628
MwoI	GCNNNNNNNGC	4 cut(s)	99, 319, 350, 352
NdeII	GATC	2 cut(s)	73, 645
NlaIII	CATG	1 cut(s)	514
NmeAIII	GCCGAG	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	137, 266, 409
PkrI	GCNGC	4 cut(s)	92, 291, 321, 385
Psp6I	CCWGG	2 cut(s)	85, 626
PspGI	CCWGG	2 cut(s)	85, 626
PstI	CTGCAG	3 cut(s)	95, 294, 388
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	53, 282, 651
SatI	GCNGC	4 cut(s)	91, 290, 320, 384
Sau3AI	GATC	2 cut(s)	73, 645
ScrFI	CCNGG	2 cut(s)	87, 628
SfaNI	GCATC	2 cut(s)	347, 370
SfcI	CTRYAG	3 cut(s)	91, 290, 384
Sse9I	AATT	4 cut(s)	35, 59, 231, 401
SspMI	CTAG	2 cut(s)	356, 641
StyD4I	CCNGG	2 cut(s)	85, 626
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	3 cut(s)	115, 152, 618
TasI	AATT	4 cut(s)	35, 59, 231, 401
TfiI	GAWTC	3 cut(s)	137, 266, 409
Tru1I	TTAA	3 cut(s)	53, 282, 651
Tru9I	TTAA	3 cut(s)	53, 282, 651
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	4 cut(s)	90, 289, 319, 383
TspDTI	ATGAA	6 cut(s)	129, 207, 387, 410, 567, 587
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	541
XapI	RAATTY	2 cut(s)	35, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	2 cut(s)	356, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.