Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007166

Physical Location & Seq

Genomic Coordinates Reverse (-)

27506269 .. 27507067

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGCGAATTCAAATCCAAAAATCTCGTTGCTGAGAGGAAGAGAAGGGAGAAGCTCAGTGGAAGGCTCCTTGCACTACATGAACAAAGCAACCATTGTTGAGGATGCCATCACTTACATCCAGGAGCTGCAGCAGAAAGTAGACTTCCTCAAAGACCAGCTTTTTGAGATGGAAGCATCATCAGAAGAAACACTGCAGCCGAACAAAGAAGAAACTCATGCTGCAGAAGAGTTGAAGAAATTCGGGATTCAGACAGAGGTGAATGTGACTAAGATTGATGGGAACAAACTTTGGGTGAAGACAGTCCTCGAGAAGAAACGAGGCGGGTTCACAAAACTGATGGAAGCCATGACCGGCTTTGGCTTCGAACTCACTGACACCAGCGTCACTACCTCCAACGGAGTAATGATGGTTTCATCCTGTATAACGGGATTCTGCTGTGATAAGCTCGAAGTTGAGCAAACCCGGGAATTGATGCTGGAGATCATCAATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

168

Amino Acids

18.72

Weight (kDa)

4.98

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21330
fragaria_vesca	FvH4_3g03170
malus_domestica	MD10G1309600.v1.1
prunus_persica	Prupe.4G030600_v2.0.a1
pyrus_communis	pycom05g30620 pycom10g26100
rosa_chinensis	RchiOBHm_Chr5g0004791 RchiOBHm_Chr5g0025741
rosa_multiflora	Rmu_sc0008308.1_g000004 Rmu_sc0010871.1_g000026
rosa_roxburghii	Rroxscaffold_1G00053450 Rroxscaffold_1G00054300
rosa_rugosa	Rorug05G0088200
rosa_samantha	Rh5AG041500 Rh5AG180100 Rh5BG041200 Rh5BG178700 Rh5BG178800 Rh5CG045000 Rh5CG196500 Rh5CG196600 Rh5DG041600 Rh5DG178500
rosa_wichuraiana	Rw5G004030 Rw5G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	10, 242
AgsI	TTSAA	2 cut(s)	15, 238
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	4 cut(s)	57, 130, 163, 451
AluI	AGCT	4 cut(s)	57, 130, 163, 451
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	2 cut(s)	311, 468
ApeKI	GCWGC	4 cut(s)	130, 133, 199, 224
ApoI	RAATTY	2 cut(s)	10, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	469, 470
AsuHPI	GGTGA	2 cut(s)	274, 310
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	2 cut(s)	311, 468
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	117, 145, 211, 211
BccI	CCATC	5 cut(s)	119, 166, 275, 337, 406
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	2 cut(s)	469, 470
BfmI	CTRYAG	3 cut(s)	131, 197, 225
BisI	GCNGC	4 cut(s)	131, 134, 200, 225
BlsI	GCNGC	4 cut(s)	132, 135, 201, 226
Bme1390I	CCNGG	3 cut(s)	125, 469, 470
BmeT110I	CYCGRG	2 cut(s)	311, 468
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	125, 469, 470
BmsI	GCATC	3 cut(s)	97, 188, 468
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	469, 470
BsaJI	CCNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	112, 120, 419
BseMII	CTCAG	2 cut(s)	26, 72
BseXI	GCAGC	4 cut(s)	117, 145, 211, 211
BsiHKCI	CYCGRG	2 cut(s)	311, 468
BsiSI	CCGG	2 cut(s)	357, 469
BsoBI	CYCGRG	2 cut(s)	311, 468
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	27, 71
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	3 cut(s)	135, 201, 229
BspT104I	TTCGAA	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	37, 225
BstBI	TTCGAA	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	35, 58, 273
BstF5I	GGATG	3 cut(s)	112, 120, 419
BstKTI	GATC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	3 cut(s)	123, 467, 468
BstSFI	CTRYAG	3 cut(s)	131, 197, 225
BstV1I	GCAGC	4 cut(s)	117, 145, 211, 211
BstV2I	GAAGAC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	112, 120, 419
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	3 cut(s)	66, 194, 375
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	356
Cfr9I	CCCGGG	1 cut(s)	468
CseI	GACGC	1 cut(s)	376
CviAII	CATG	3 cut(s)	82, 221, 352
CviJI	RGCY	9 cut(s)	57, 69, 130, 163, 202, 350, 360, 366, 451
CviKI_1	RGCY	9 cut(s)	57, 69, 130, 163, 202, 350, 360, 366, 451
DdeI	CTNAG	3 cut(s)	35, 58, 273
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	37, 225
EarI	CTCTTC	2 cut(s)	37, 225
Eco88I	CYCGRG	2 cut(s)	311, 468
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	85, 224, 355
FaiI	YATR	6 cut(s)	83, 222, 353, 428, 500, 502
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	81, 220, 351
FauI	CCCGC	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	131, 134, 200, 225
FokI	GGATG	3 cut(s)	107, 119, 406
Fsp4HI	GCNGC	4 cut(s)	131, 134, 200, 225
GluI	GCNGC	4 cut(s)	131, 134, 200, 225
GsuI	CTGGAG	1 cut(s)	503
HapII	CCGG	2 cut(s)	357, 469
HgaI	GACGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	85, 224, 355
HinfI	GANTC	2 cut(s)	250, 435
HpaII	CCGG	2 cut(s)	357, 469
HphI	GGTGA	2 cut(s)	274, 310
Hpy166II	GTNNAC	2 cut(s)	145, 333
Hpy188I	TCNGA	2 cut(s)	187, 255
Hpy188III	TCNNGA	2 cut(s)	247, 313
Hpy8I	GTNNAC	2 cut(s)	145, 333
HpyAV	CCTTC	2 cut(s)	41, 59
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	76, 133, 199, 227
HpyF3I	CTNAG	3 cut(s)	35, 58, 273
Hsp92II	CATG	3 cut(s)	85, 224, 355
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	74, 127
LpnPI	CCDG	8 cut(s)	110, 137, 173, 370, 397, 436, 467, 482
Lsp1109I	GCAGC	4 cut(s)	117, 145, 211, 211
LweI	GCATC	3 cut(s)	97, 188, 468
MaeIII	GTNAC	2 cut(s)	268, 388
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	7 cut(s)	54, 200, 224, 242, 250, 313, 328
MluCI	AATT	3 cut(s)	10, 242, 473
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	32, 97, 161, 253, 317, 320, 406
MroXI	GAANNNNTTC	1 cut(s)	242
MspI	CCGG	2 cut(s)	357, 469
MspR9I	CCNGG	3 cut(s)	125, 469, 470
MvaI	CCWGG	1 cut(s)	125
NciI	CCSGG	2 cut(s)	469, 470
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	3 cut(s)	85, 224, 355
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	268, 388
NspV	TTCGAA	1 cut(s)	369
PaeR7I	CTCGAG	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	250, 435
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	132, 135, 201, 226
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	3 cut(s)	135, 201, 229
PstNI	CAGNNNCTG	1 cut(s)	130
SatI	GCNGC	4 cut(s)	131, 134, 200, 225
Sau3AI	GATC	1 cut(s)	486
ScrFI	CCNGG	3 cut(s)	125, 469, 470
SetI	ASST	6 cut(s)	59, 132, 165, 264, 398, 453
SfaNI	GCATC	3 cut(s)	97, 188, 468
SfcI	CTRYAG	3 cut(s)	131, 197, 225
Sfr274I	CTCGAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	311
SmaI	CCCGGG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	10, 242, 473
SsiI	CCGC	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	123, 467, 468
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	312, 369, 453
TasI	AATT	3 cut(s)	10, 242, 473
TfiI	GAWTC	2 cut(s)	250, 435
TscAI	CASTG	3 cut(s)	66, 201, 382
TseFI	GTSAC	2 cut(s)	268, 388
TseI	GCWGC	4 cut(s)	130, 133, 199, 224
Tsp45I	GTSAC	2 cut(s)	268, 388
TspDTI	ATGAA	2 cut(s)	98, 408
TspGWI	ACGGA	1 cut(s)	417
TspMI	CCCGGG	1 cut(s)	468
TspRI	CASTG	3 cut(s)	66, 201, 382
XapI	RAATTY	2 cut(s)	10, 242
XhoI	CTCGAG	1 cut(s)	311
XmaI	CCCGGG	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.